PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 1681 1682 1683 1684 1685 1686 1687 1688 1689 ... 1720 1721 » 84201-84250 / 86044 show all
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	96.1538	1	0	1	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	91.6129	84.5238	100.0000	53.8961	71	13	71	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	99.8621	1	0	1	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	95.8333	1	0	1	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	95.8140	91.9643	100.0000	71.9346	103	9	103	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	97.4359	95.0000	100.0000	78.8104	57	3	57	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	91.5952	84.4937	100.0000	35.0348	534	98	560	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_gt10	*	100.0000	100.0000	100.0000	99.9933	1	0	1	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	100.0000	100.0000	100.0000	99.9836	1	0	1	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	96.9476	94.0760	100.0000	38.5189	1064	67	1071	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	95.6731	91.7051	100.0000	35.4740	199	18	211	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	97.7124	95.5272	100.0000	30.1402	299	14	299	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	hetalt	97.7778	95.6522	100.0000	8.3333	22	1	22	0	0
ckim-vqsr	INDEL	I1_5	map_l100_m0_e0	hetalt	100.0000	100.0000	100.0000	93.0233	9	0	9	0	0
ckim-vqsr	INDEL	I1_5	map_l100_m1_e0	hetalt	96.4706	93.1818	100.0000	88.4507	41	3	41	0	0
ckim-vqsr	INDEL	I1_5	map_l100_m2_e0	hetalt	96.4706	93.1818	100.0000	89.3782	41	3	41	0	0
ckim-vqsr	INDEL	I1_5	map_l100_m2_e1	hetalt	96.5517	93.3333	100.0000	89.3401	42	3	42	0	0
ckim-vqsr	INDEL	I1_5	map_l125_m0_e0	hetalt	100.0000	100.0000	100.0000	95.7447	4	0	4	0	0
ckim-vqsr	INDEL	I1_5	map_l125_m1_e0	hetalt	100.0000	100.0000	100.0000	93.0612	17	0	17	0	0
ckim-vqsr	INDEL	I1_5	map_l125_m2_e0	hetalt	100.0000	100.0000	100.0000	93.2143	19	0	19	0	0
ckim-vqsr	INDEL	I1_5	map_l125_m2_e1	hetalt	100.0000	100.0000	100.0000	93.3333	19	0	19	0	0
ckim-vqsr	INDEL	I1_5	map_l150_m0_e0	hetalt	100.0000	100.0000	100.0000	95.5224	3	0	3	0	0
ckim-vqsr	INDEL	I1_5	map_l150_m1_e0	hetalt	100.0000	100.0000	100.0000	95.1087	9	0	9	0	0
ckim-vqsr	INDEL	I1_5	map_l150_m2_e0	hetalt	100.0000	100.0000	100.0000	95.8140	9	0	9	0	0
ckim-vqsr	INDEL	I1_5	map_l150_m2_e1	hetalt	100.0000	100.0000	100.0000	95.4545	10	0	10	0	0
ckim-vqsr	INDEL	I1_5	map_l250_m1_e0	hetalt	100.0000	100.0000	100.0000	97.8947	2	0	2	0	0
ckim-vqsr	INDEL	I1_5	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	98.3051	2	0	2	0	0
ckim-vqsr	INDEL	I1_5	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	98.3333	2	0	2	0	0
ckim-vqsr	INDEL	I1_5	map_siren	hetalt	95.3271	91.0714	100.0000	86.8047	102	10	102	0	0
ckim-vqsr	INDEL	I1_5	segdup	hetalt	96.7742	93.7500	100.0000	95.8106	45	3	46	0	0
ckim-vqsr	INDEL	I1_5	tech_badpromoters	*	100.0000	100.0000	100.0000	54.1667	22	0	22	0	0
ckim-vqsr	INDEL	I1_5	tech_badpromoters	het	100.0000	100.0000	100.0000	46.6667	8	0	8	0	0
ckim-vqsr	INDEL	I1_5	tech_badpromoters	hetalt	100.0000	100.0000	100.0000	50.0000	1	0	1	0	0
ckim-vqsr	INDEL	I1_5	tech_badpromoters	homalt	100.0000	100.0000	100.0000	58.0645	13	0	13	0	0
ckim-vqsr	INDEL	I6_15	HG002complexvar	hetalt	95.4701	91.3328	100.0000	52.5604	1117	106	1158	0	0
ckim-vqsr	INDEL	I6_15	func_cds	het	100.0000	100.0000	100.0000	44.1860	24	0	24	0	0
ckim-vqsr	INDEL	I6_15	func_cds	hetalt	85.7143	75.0000	100.0000	0.0000	3	1	3	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	98.1132	96.2963	100.0000	78.8043	78	3	78	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	88.0734	78.6885	100.0000	52.4752	48	13	48	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4318	98.8701	100.0000	74.3402	175	2	175	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	97.5904	95.2941	100.0000	52.8736	81	4	82	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5851	99.1736	100.0000	69.2994	240	2	241	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	100.0000	100.0000	100.0000	72.3982	122	0	122	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	98.0392	96.1538	100.0000	54.0541	50	2	51	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	70.6897	68	0	68	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.6928	97.4194	100.0000	82.8829	151	4	152	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.1870	98.3871	100.0000	86.8365	61	1	62	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	96.4706	93.1818	100.0000	72.8477	41	3	41	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	100.0000	100.0000	100.0000	81.5789	49	0	49	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	100.0000	100.0000	100.0000	99.8656	2	0	2	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge