PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
84201-84250 / 86044 show all
ckim-vqsrINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.1538
10100
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
91.6129
84.5238
100.0000
53.8961
71137100
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.8621
10100
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.8333
10100
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
95.8140
91.9643
100.0000
71.9346
103910300
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
97.4359
95.0000
100.0000
78.8104
5735700
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
91.5952
84.4937
100.0000
35.0348
5349856000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9933
10100
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.9836
10100
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
96.9476
94.0760
100.0000
38.5189
106467107100
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
95.6731
91.7051
100.0000
35.4740
1991821100
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
97.7124
95.5272
100.0000
30.1402
2991429900
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
97.7778
95.6522
100.0000
8.3333
2212200
ckim-vqsrINDELI1_5map_l100_m0_e0hetalt
100.0000
100.0000
100.0000
93.0233
90900
ckim-vqsrINDELI1_5map_l100_m1_e0hetalt
96.4706
93.1818
100.0000
88.4507
4134100
ckim-vqsrINDELI1_5map_l100_m2_e0hetalt
96.4706
93.1818
100.0000
89.3782
4134100
ckim-vqsrINDELI1_5map_l100_m2_e1hetalt
96.5517
93.3333
100.0000
89.3401
4234200
ckim-vqsrINDELI1_5map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
95.7447
40400
ckim-vqsrINDELI1_5map_l125_m1_e0hetalt
100.0000
100.0000
100.0000
93.0612
1701700
ckim-vqsrINDELI1_5map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
93.2143
1901900
ckim-vqsrINDELI1_5map_l125_m2_e1hetalt
100.0000
100.0000
100.0000
93.3333
1901900
ckim-vqsrINDELI1_5map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
95.5224
30300
ckim-vqsrINDELI1_5map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
95.1087
90900
ckim-vqsrINDELI1_5map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
95.8140
90900
ckim-vqsrINDELI1_5map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
95.4545
1001000
ckim-vqsrINDELI1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
97.8947
20200
ckim-vqsrINDELI1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.3051
20200
ckim-vqsrINDELI1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.3333
20200
ckim-vqsrINDELI1_5map_sirenhetalt
95.3271
91.0714
100.0000
86.8047
1021010200
ckim-vqsrINDELI1_5segduphetalt
96.7742
93.7500
100.0000
95.8106
4534600
ckim-vqsrINDELI1_5tech_badpromoters*
100.0000
100.0000
100.0000
54.1667
2202200
ckim-vqsrINDELI1_5tech_badpromotershet
100.0000
100.0000
100.0000
46.6667
80800
ckim-vqsrINDELI1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
10100
ckim-vqsrINDELI1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
58.0645
1301300
ckim-vqsrINDELI6_15HG002complexvarhetalt
95.4701
91.3328
100.0000
52.5604
1117106115800
ckim-vqsrINDELI6_15func_cdshet
100.0000
100.0000
100.0000
44.1860
2402400
ckim-vqsrINDELI6_15func_cdshetalt
85.7143
75.0000
100.0000
0.0000
31300
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
98.1132
96.2963
100.0000
78.8043
7837800
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
88.0734
78.6885
100.0000
52.4752
48134800
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4318
98.8701
100.0000
74.3402
175217500
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
97.5904
95.2941
100.0000
52.8736
8148200
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5851
99.1736
100.0000
69.2994
240224100
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
72.3982
122012200
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
98.0392
96.1538
100.0000
54.0541
5025100
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
70.6897
6806800
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10*
98.6928
97.4194
100.0000
82.8829
151415200
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10het
99.1870
98.3871
100.0000
86.8365
6116200
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
96.4706
93.1818
100.0000
72.8477
4134100
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
81.5789
4904900
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.8656
20200