PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
83451-83500 / 86044 show all
jlack-gatkINDELD6_15tech_badpromoters*
100.0000
100.0000
100.0000
51.4286
1701700
jlack-gatkINDELD6_15tech_badpromotershet
100.0000
100.0000
100.0000
52.3810
1001000
jlack-gatkINDELD6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
10100
jlack-gatkINDELD6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
53.8462
60600
jlack-gatkINDELI16_PLUSfunc_cds*
95.6522
91.6667
100.0000
78.8462
1111100
jlack-gatkINDELI16_PLUSfunc_cdshet
100.0000
100.0000
100.0000
71.8750
90900
jlack-gatkINDELI16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
88.2353
20200
jlack-gatkINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
91.1392
83.7209
100.0000
77.1429
72148000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
97.1429
94.4444
100.0000
84.6774
1711900
jli-customINDELD16_PLUSdecoy*
100.0000
100.0000
100.0000
98.8571
60600
jli-customINDELD16_PLUSdecoyhet
100.0000
100.0000
100.0000
98.8506
40400
jli-customINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
98.6395
20200
jli-customINDELD16_PLUSfunc_cds*
100.0000
100.0000
100.0000
74.4681
1201200
jli-customINDELD16_PLUSfunc_cdshet
100.0000
100.0000
100.0000
76.4706
80800
jli-customINDELD16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
69.2308
40400
jli-customINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.7199
10100
jli-customINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
10100
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
90.0000
81.8182
100.0000
84.4156
921200
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.7110
10100
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
87.5000
10100
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.2054
98.4234
100.0000
72.6469
437743300
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
94.4444
89.4737
100.0000
70.4225
1722100
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6283
99.2593
100.0000
59.6970
268226600
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
95.6522
91.6667
100.0000
43.4783
1111300
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
99.4220
98.8506
100.0000
80.7606
8618600
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
99.0291
98.0769
100.0000
83.2143
5114700
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
56.7568
1201600
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
82.3077
2302300
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
88.5246
79.4118
100.0000
96.1864
54145400
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
84.2105
72.7273
100.0000
96.1585
32123200
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10hetalt
94.1176
88.8889
100.0000
92.6606
81800
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
96.5517
93.3333
100.0000
97.0464
1411400
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
22.8571
5105400
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
62.1849
4504500
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
91.3043
84.0000
100.0000
42.5000
2142300
jli-customINDELD16_PLUSmap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
89.5833
40500
jli-customINDELD16_PLUSmap_l100_m1_e0hetalt
91.6667
84.6154
100.0000
75.7895
2242300
jli-customINDELD16_PLUSmap_l100_m2_e0hetalt
91.6667
84.6154
100.0000
76.4706
2242400
jli-customINDELD16_PLUSmap_l100_m2_e1hetalt
90.9091
83.3333
100.0000
75.4545
2552700
jli-customINDELD16_PLUSmap_l125_m0_e0*
100.0000
100.0000
100.0000
96.0526
1201200
jli-customINDELD16_PLUSmap_l125_m0_e0het
100.0000
100.0000
100.0000
95.8525
90900
jli-customINDELD16_PLUSmap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
96.2963
10100
jli-customINDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
96.6667
20200
jli-customINDELD16_PLUSmap_l125_m1_e0het
100.0000
100.0000
100.0000
94.8454
2002000
jli-customINDELD16_PLUSmap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
91.4286
30300
jli-customINDELD16_PLUSmap_l125_m2_e0het
100.0000
100.0000
100.0000
95.4338
2002000
jli-customINDELD16_PLUSmap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
92.1053
30300
jli-customINDELD16_PLUSmap_l125_m2_e1het
100.0000
100.0000
100.0000
95.5556
2002000
jli-customINDELD16_PLUSmap_l125_m2_e1hetalt
85.7143
75.0000
100.0000
92.1053
31300
jli-customINDELD16_PLUSmap_l150_m0_e0*
100.0000
100.0000
100.0000
96.5347
70700