PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
83401-83450 / 86044 show all
jlack-gatkINDELD1_5map_l150_m2_e1hetalt
93.3333
87.5000
100.0000
97.4359
71700
jlack-gatkINDELD1_5map_l250_m0_e0homalt
100.0000
100.0000
100.0000
97.0721
1301300
jlack-gatkINDELD1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
97.7273
30300
jlack-gatkINDELD1_5map_l250_m1_e0homalt
99.1150
98.2456
100.0000
93.7916
5615600
jlack-gatkINDELD1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.1132
30300
jlack-gatkINDELD1_5map_l250_m2_e0homalt
99.1597
98.3333
100.0000
94.2774
5915900
jlack-gatkINDELD1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.1707
30300
jlack-gatkINDELD1_5map_l250_m2_e1homalt
99.1597
98.3333
100.0000
94.4497
5915900
jlack-gatkINDELD1_5map_sirenhetalt
95.0000
90.4762
100.0000
90.7543
7687600
jlack-gatkINDELD1_5segduphetalt
97.0297
94.2308
100.0000
95.7018
4934900
jlack-gatkINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9959
10100
jlack-gatkINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9946
10100
jlack-gatkINDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
20200
jlack-gatkINDELD1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
43.7500
90900
jlack-gatkINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.1736
10100
jlack-gatkINDELD6_15func_cds*
100.0000
100.0000
100.0000
57.8431
4304300
jlack-gatkINDELD6_15func_cdshet
100.0000
100.0000
100.0000
57.3529
2902900
jlack-gatkINDELD6_15func_cdshetalt
100.0000
100.0000
100.0000
60.0000
20200
jlack-gatkINDELD6_15func_cdshomalt
100.0000
100.0000
100.0000
58.6207
1201200
jlack-gatkINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.0588
60600
jlack-gatkINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.8417
30300
jlack-gatkINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
jlack-gatkINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
97.7778
10100
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
91.6667
84.6154
100.0000
58.7500
3363300
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.7401
40400
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.3740
20200
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.6154
20200
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
92.8571
20200
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
93.7500
10100
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
75.0000
10100
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
82.2967
7407400
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5701
99.1438
100.0000
18.1946
579558000
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
96.2567
92.7835
100.0000
22.4138
9079000
jlack-gatkINDELD6_15map_l100_m0_e0homalt
97.8723
95.8333
100.0000
89.0995
2312300
jlack-gatkINDELD6_15map_l100_m1_e0homalt
99.2126
98.4375
100.0000
85.0000
6316300
jlack-gatkINDELD6_15map_l100_m2_e0homalt
99.2248
98.4615
100.0000
85.7143
6416400
jlack-gatkINDELD6_15map_l125_m0_e0homalt
100.0000
100.0000
100.0000
91.7241
1201200
jlack-gatkINDELD6_15map_l125_m1_e0homalt
100.0000
100.0000
100.0000
87.5458
3403400
jlack-gatkINDELD6_15map_l125_m2_e0homalt
100.0000
100.0000
100.0000
87.8378
3603600
jlack-gatkINDELD6_15map_l150_m0_e0homalt
100.0000
100.0000
100.0000
93.9130
70700
jlack-gatkINDELD6_15map_l150_m1_e0homalt
100.0000
100.0000
100.0000
87.6777
2602600
jlack-gatkINDELD6_15map_l150_m2_e0homalt
100.0000
100.0000
100.0000
88.2353
2802800
jlack-gatkINDELD6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
97.0588
20200
jlack-gatkINDELD6_15map_l250_m1_e0hetalt
66.6667
50.0000
100.0000
97.7778
11100
jlack-gatkINDELD6_15map_l250_m1_e0homalt
100.0000
100.0000
100.0000
95.5357
50500
jlack-gatkINDELD6_15map_l250_m2_e0hetalt
66.6667
50.0000
100.0000
98.1818
11100
jlack-gatkINDELD6_15map_l250_m2_e0homalt
100.0000
100.0000
100.0000
95.4198
60600
jlack-gatkINDELD6_15map_l250_m2_e1hetalt
66.6667
50.0000
100.0000
98.2456
11100
jlack-gatkINDELD6_15map_l250_m2_e1homalt
100.0000
100.0000
100.0000
95.5882
60600
jlack-gatkINDELD6_15segduphetalt
92.3077
85.7143
100.0000
90.2552
4274200