PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
83051-83100 / 86044 show all
jli-customINDEL*tech_badpromotershet
96.0000
92.3077
100.0000
51.3514
3633600
jli-customINDEL*tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
40400
jli-customINDEL*tech_badpromotershomalt
100.0000
100.0000
100.0000
56.5789
3303300
hfeng-pmm2INDELI6_15map_l250_m2_e1homalt
80.0000
66.6667
100.0000
97.7273
21200
hfeng-pmm2INDELI6_15map_sirenhetalt
96.4029
93.0556
100.0000
79.7583
6756700
hfeng-pmm2INDELI6_15segdup*
99.1354
98.2857
100.0000
92.5444
172317200
hfeng-pmm2INDELI6_15segduphet
99.3939
98.7952
100.0000
93.5280
8218200
hfeng-pmm2INDELI6_15segduphetalt
97.7273
95.5556
100.0000
90.1376
4324300
hfeng-pmm2INDELI6_15segduphomalt
100.0000
100.0000
100.0000
92.2185
4704700
hfeng-pmm2INDELI6_15tech_badpromoters*
100.0000
100.0000
100.0000
53.5714
1301300
hfeng-pmm2INDELI6_15tech_badpromotershet
100.0000
100.0000
100.0000
56.2500
70700
hfeng-pmm2INDELI6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
30300
hfeng-pmm2INDELI6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
50.0000
30300
hfeng-pmm2SNP**hetalt
99.8851
99.7704
100.0000
49.0323
869286900
hfeng-pmm2SNP*HG002complexvarhetalt
99.6764
99.3548
100.0000
39.9610
308230800
hfeng-pmm2SNP*HG002compoundhethetalt
99.8839
99.7680
100.0000
23.2143
860286000
hfeng-pmm2SNP*func_cdshetalt
100.0000
100.0000
100.0000
62.9630
1001000
hfeng-pmm2SNP*func_cdshomalt
99.9928
99.9857
100.0000
22.0422
69781697800
hfeng-pmm2SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
85.3659
1211200
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
94.1176
1501500
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
10100
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9111
99.8224
100.0000
54.2066
22484224800
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
83.3333
10100
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8914
99.7831
100.0000
58.8551
13803138000
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.6667
20200
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4183
98.8433
100.0000
86.3471
9401194000
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.5875
99.1784
100.0000
85.2685
845784500
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.4706
30300
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
94.1176
1501500
hfeng-pmm2SNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
96.2963
10100
hfeng-pmm2SNP*lowcmp_SimpleRepeat_diTR_51to200homalt
92.8571
86.6667
100.0000
96.7005
1321300
hfeng-pmm2SNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
70.5882
50500
hfeng-pmm2SNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
70.5882
50500
hfeng-pmm2SNP*lowcmp_SimpleRepeat_triTR_51to200*
94.1176
88.8889
100.0000
96.4602
81800
hfeng-pmm2SNP*lowcmp_SimpleRepeat_triTR_51to200het
92.3077
85.7143
100.0000
95.5556
61600
hfeng-pmm2SNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
97.8022
20200
hfeng-pmm2SNP*map_l100_m0_e0hetalt
100.0000
100.0000
100.0000
79.4872
1601600
hfeng-pmm2SNP*map_l100_m1_e0hetalt
100.0000
100.0000
100.0000
76.9663
4104100
hfeng-pmm2SNP*map_l100_m2_e0hetalt
100.0000
100.0000
100.0000
78.8945
4204200
hfeng-pmm2SNP*map_l100_m2_e1hetalt
100.0000
100.0000
100.0000
78.5000
4304300
hfeng-pmm2SNP*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
85.0000
90900
hfeng-pmm2SNP*map_l125_m1_e0hetalt
100.0000
100.0000
100.0000
77.7778
3003000
hfeng-pmm2SNP*map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
80.8917
3003000
hfeng-pmm2SNP*map_l125_m2_e1hetalt
100.0000
100.0000
100.0000
80.8917
3003000
hfeng-pmm2SNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
94.0000
30300
hfeng-pmm2SNP*map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
81.3084
2002000
hfeng-pmm2SNP*map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
83.8710
2002000
hfeng-pmm2SNP*map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
83.8710
2002000
hfeng-pmm2SNP*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
93.5484
40400