PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
82851-82900 / 86044 show all | |||||||||||||||
jlack-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.0000 | 2 | 1 | 2 | 0 | 0 | ||
jlack-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 99.0338 | 2 | 1 | 2 | 0 | 0 | ||
jlack-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
jlack-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.1935 | 1 | 0 | 1 | 0 | 0 | ||
jlack-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3333 | 1 | 1 | 1 | 0 | 0 | ||
jlack-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.8506 | 2 | 1 | 2 | 0 | 0 | ||
jlack-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.7500 | 1 | 1 | 1 | 0 | 0 | ||
jlack-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.9071 | 2 | 1 | 2 | 0 | 0 | ||
jlack-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.7500 | 1 | 1 | 1 | 0 | 0 | ||
jlack-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.9071 | 2 | 1 | 2 | 0 | 0 | ||
jlack-gatk | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 86.2069 | 15 | 1 | 16 | 0 | 0 | ||
jlack-gatk | INDEL | I16_PLUS | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 98.0645 | 3 | 1 | 3 | 0 | 0 | ||
jlack-gatk | INDEL | I16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8370 | 19 | 0 | 19 | 0 | 0 | ||
jlack-gatk | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 4 | 0 | 4 | 0 | 0 | ||
jlack-gatk | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
jlack-gatk | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 2 | 0 | 2 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.4094 | 119 | 0 | 119 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8601 | 1 | 0 | 1 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 1 | 0 | 1 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.3077 | 85.7143 | 100.0000 | 59.7765 | 72 | 12 | 72 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8553 | 1 | 0 | 1 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 1 | 0 | 1 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.7169 | 95.5357 | 100.0000 | 75.9551 | 107 | 5 | 107 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.3051 | 96.6667 | 100.0000 | 82.3708 | 58 | 2 | 58 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.1998 | 96.4633 | 100.0000 | 41.4933 | 1091 | 40 | 1097 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 94.9153 | 90.3226 | 100.0000 | 39.1176 | 196 | 21 | 207 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.0385 | 1 | 0 | 1 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.3043 | 84.0000 | 100.0000 | 63.1579 | 21 | 4 | 21 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 2 | 0 | 2 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.4762 | 82.6087 | 100.0000 | 13.6364 | 19 | 4 | 19 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1558 | 9 | 0 | 9 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 90.1720 | 40 | 4 | 40 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 90.9502 | 40 | 4 | 40 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 95.3488 | 91.1111 | 100.0000 | 90.8686 | 41 | 4 | 41 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 4 | 0 | 4 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1781 | 17 | 0 | 17 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 94.5122 | 18 | 1 | 18 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 97.2973 | 94.7368 | 100.0000 | 94.5619 | 18 | 1 | 18 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6292 | 3 | 0 | 3 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8716 | 9 | 0 | 9 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 9 | 0 | 9 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1089 | 10 | 0 | 10 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.4127 | 2 | 0 | 2 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6842 | 2 | 0 | 2 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7013 | 2 | 0 | 2 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | map_siren | hetalt | 97.2477 | 94.6429 | 100.0000 | 87.9682 | 106 | 6 | 106 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | segdup | hetalt | 97.8723 | 95.8333 | 100.0000 | 96.2036 | 46 | 2 | 47 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 52.1739 | 22 | 0 | 22 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 8 | 0 | 8 | 0 | 0 |