PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
82751-82800 / 86044 show all | |||||||||||||||
hfeng-pmm2 | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2617 | 4 | 0 | 4 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3852 | 17 | 0 | 17 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5593 | 19 | 0 | 19 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.6667 | 19 | 0 | 19 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2025 | 3 | 0 | 3 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3608 | 9 | 0 | 9 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0352 | 9 | 0 | 9 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.7082 | 10 | 0 | 10 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I1_5 | map_l250_m0_e0 | het | 92.8571 | 86.6667 | 100.0000 | 98.5426 | 13 | 2 | 13 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0583 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.4962 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.5185 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 87.5429 | 109 | 3 | 109 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 96.2046 | 45 | 3 | 46 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 52.1739 | 22 | 0 | 22 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 38.4615 | 8 | 0 | 8 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.0645 | 13 | 0 | 13 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | HG002complexvar | hetalt | 97.2701 | 94.6852 | 100.0000 | 56.4680 | 1158 | 65 | 1198 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | HG002compoundhet | hetalt | 96.6215 | 93.4637 | 100.0000 | 30.1298 | 7979 | 558 | 8019 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 40.0000 | 42 | 1 | 42 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 24 | 0 | 24 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 42.3077 | 15 | 0 | 15 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.8210 | 86.6038 | 100.0000 | 48.3207 | 459 | 71 | 477 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.0714 | 83.6066 | 100.0000 | 54.0541 | 51 | 10 | 51 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.5673 | 97.1751 | 100.0000 | 72.6984 | 172 | 5 | 172 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.2036 | 96.4706 | 100.0000 | 57.8680 | 82 | 3 | 83 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.1667 | 98.3471 | 100.0000 | 68.1758 | 238 | 4 | 239 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.1736 | 98.3607 | 100.0000 | 70.2970 | 120 | 2 | 120 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0392 | 96.1538 | 100.0000 | 59.8425 | 50 | 2 | 51 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 69.0909 | 68 | 0 | 68 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.6036 | 86.2259 | 100.0000 | 47.3344 | 313 | 50 | 326 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 81.2903 | 68.4783 | 100.0000 | 58.5526 | 63 | 29 | 63 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 80.5755 | 67.4699 | 100.0000 | 30.7692 | 56 | 27 | 63 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0228 | 98.0645 | 100.0000 | 82.2093 | 152 | 3 | 153 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.1870 | 98.3871 | 100.0000 | 85.3774 | 61 | 1 | 62 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.6744 | 95.4545 | 100.0000 | 75.8621 | 42 | 2 | 42 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.2977 | 49 | 0 | 49 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.8596 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.4318 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.4152 | 96.8799 | 100.0000 | 43.8344 | 621 | 20 | 624 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 91.0156 | 30 | 5 | 23 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.8621 | 92.0530 | 100.0000 | 48.9510 | 139 | 12 | 146 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6399 | 99.2823 | 100.0000 | 45.8931 | 415 | 3 | 415 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 59.3857 | 120 | 2 | 119 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.7886 | 99.5781 | 100.0000 | 25.2366 | 236 | 1 | 237 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 62.4204 | 59 | 0 | 59 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 92.3077 | 100.0000 | 66.6667 | 12 | 1 | 12 | 0 | 0 | ||
hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.6522 | 91.6667 | 100.0000 | 33.3333 | 11 | 1 | 12 | 0 | 0 |