PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 1650 1651 1652 1653 1654 1655 1656 1657 1658 ... 1720 1721 » 82651-82700 / 86044 show all
hfeng-pmm2	INDEL	D6_15	map_l250_m1_e0	homalt	100.0000	100.0000	100.0000	95.4545	5	0	5	0	0
hfeng-pmm2	INDEL	D6_15	map_l250_m2_e0	*	100.0000	100.0000	100.0000	96.3516	22	0	22	0	0
hfeng-pmm2	INDEL	D6_15	map_l250_m2_e0	het	100.0000	100.0000	100.0000	96.6427	14	0	14	0	0
hfeng-pmm2	INDEL	D6_15	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	96.6102	2	0	2	0	0
hfeng-pmm2	INDEL	D6_15	map_l250_m2_e0	homalt	100.0000	100.0000	100.0000	95.2756	6	0	6	0	0
hfeng-pmm2	INDEL	D6_15	map_l250_m2_e1	*	100.0000	100.0000	100.0000	96.4401	22	0	22	0	0
hfeng-pmm2	INDEL	D6_15	map_l250_m2_e1	het	100.0000	100.0000	100.0000	96.7366	14	0	14	0	0
hfeng-pmm2	INDEL	D6_15	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	96.6667	2	0	2	0	0
hfeng-pmm2	INDEL	D6_15	map_l250_m2_e1	homalt	100.0000	100.0000	100.0000	95.3488	6	0	6	0	0
hfeng-pmm2	INDEL	D6_15	map_siren	hetalt	96.3351	92.9293	100.0000	76.4706	92	7	92	0	0
hfeng-pmm2	INDEL	D6_15	segdup	hetalt	93.4783	87.7551	100.0000	90.6318	43	6	43	0	0
hfeng-pmm2	INDEL	D6_15	tech_badpromoters	*	93.7500	88.2353	100.0000	50.0000	15	2	15	0	0
hfeng-pmm2	INDEL	D6_15	tech_badpromoters	het	88.8889	80.0000	100.0000	52.9412	8	2	8	0	0
hfeng-pmm2	INDEL	D6_15	tech_badpromoters	hetalt	100.0000	100.0000	100.0000	0.0000	1	0	1	0	0
hfeng-pmm2	INDEL	D6_15	tech_badpromoters	homalt	100.0000	100.0000	100.0000	50.0000	6	0	6	0	0
hfeng-pmm2	INDEL	I16_PLUS	HG002complexvar	het	98.8593	97.7444	100.0000	63.5519	650	15	628	0	0
hfeng-pmm2	INDEL	I16_PLUS	func_cds	*	95.6522	91.6667	100.0000	74.4186	11	1	11	0	0
hfeng-pmm2	INDEL	I16_PLUS	func_cds	het	100.0000	100.0000	100.0000	59.0909	9	0	9	0	0
hfeng-pmm2	INDEL	I16_PLUS	func_cds	homalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.4785	89.5349	100.0000	78.2152	77	9	83	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	84.6154	18	0	20	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.1501	98.3146	100.0000	80.6416	175	3	175	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.0654	98.1481	100.0000	79.5276	106	2	104	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	76.7296	35	0	37	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.5507	97.1429	100.0000	85.6540	34	1	34	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	100.0000	100.0000	100.0000	75.0700	89	0	89	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	100.0000	100.0000	100.0000	74.1463	53	0	53	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	66.6667	20	0	20	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	82.6087	16	0	16	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.7273	86.4407	100.0000	73.9130	51	8	54	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	0.0000	0.0000	100.0000	85.7143	0	2	1	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	het	100.0000	100.0000	100.0000	87.2881	15	0	15	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	96.2963	92.8571	100.0000	61.6438	26	2	28	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.9592	96.0000	100.0000	67.2447	168	7	170	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	*	91.6667	84.6154	100.0000	91.0931	22	4	22	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	93.0233	86.9565	100.0000	75.2809	20	3	22	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	hetalt	100.0000	100.0000	100.0000	69.7674	13	0	13	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	homalt	100.0000	100.0000	100.0000	80.4878	8	0	8	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	66.6667	50.0000	100.0000	85.7143	2	2	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	hetalt	100.0000	100.0000	100.0000	60.0000	2	0	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l100_m0_e0	hetalt	100.0000	100.0000	100.0000	90.0000	1	0	1	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l100_m0_e0	homalt	100.0000	100.0000	100.0000	98.4962	2	0	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l100_m1_e0	hetalt	80.0000	66.6667	100.0000	93.3333	2	1	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l100_m1_e0	homalt	100.0000	100.0000	100.0000	97.5000	5	0	5	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l100_m2_e0	hetalt	80.0000	66.6667	100.0000	94.4444	2	1	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l100_m2_e1	hetalt	80.0000	66.6667	100.0000	94.5946	2	1	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l125_m0_e0	hetalt	100.0000	100.0000	100.0000	85.7143	1	0	1	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l125_m0_e0	homalt	100.0000	100.0000	100.0000	98.3193	2	0	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l125_m1_e0	hetalt	80.0000	66.6667	100.0000	90.4762	2	1	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l125_m1_e0	homalt	100.0000	100.0000	100.0000	98.1595	3	0	3	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge