PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
82151-82200 / 86044 show all | |||||||||||||||
hfeng-pmm3 | INDEL | D6_15 | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 93.6508 | 20 | 0 | 20 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 5 | 0 | 5 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.5185 | 7 | 0 | 7 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l150_m1_e0 | * | 99.3103 | 98.6301 | 100.0000 | 90.9434 | 72 | 1 | 72 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l150_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.5144 | 39 | 0 | 39 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.8734 | 8 | 0 | 8 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l150_m1_e0 | homalt | 98.0392 | 96.1538 | 100.0000 | 87.1795 | 25 | 1 | 25 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 90.8989 | 81 | 1 | 81 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.0690 | 46 | 0 | 46 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.2088 | 8 | 0 | 8 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 87.6712 | 27 | 1 | 27 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e1 | * | 98.8095 | 97.6471 | 100.0000 | 90.8891 | 83 | 2 | 83 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 92.0875 | 47 | 0 | 47 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 91.4894 | 8 | 1 | 8 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 87.4439 | 28 | 1 | 28 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 6 | 0 | 6 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.4684 | 4 | 0 | 4 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7213 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 95.8716 | 18 | 0 | 18 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.2199 | 11 | 0 | 11 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6522 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.9495 | 5 | 0 | 5 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 95.7115 | 22 | 0 | 22 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.8944 | 14 | 0 | 14 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4912 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.7826 | 6 | 0 | 6 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 95.8175 | 22 | 0 | 22 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 96.0114 | 14 | 0 | 14 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8718 | 6 | 0 | 6 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | map_siren | hetalt | 96.3351 | 92.9293 | 100.0000 | 75.2022 | 92 | 7 | 92 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | segdup | het | 97.7778 | 95.6522 | 100.0000 | 94.1216 | 88 | 4 | 88 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | segdup | hetalt | 93.4783 | 87.7551 | 100.0000 | 90.3587 | 43 | 6 | 43 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | tech_badpromoters | * | 93.7500 | 88.2353 | 100.0000 | 54.5455 | 15 | 2 | 15 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | tech_badpromoters | het | 88.8889 | 80.0000 | 100.0000 | 55.5556 | 8 | 2 | 8 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 6 | 0 | 6 | 0 | 0 | ||
hfeng-pmm3 | INDEL | I16_PLUS | HG002complexvar | het | 98.6280 | 97.2932 | 100.0000 | 62.8860 | 647 | 18 | 625 | 0 | 0 | ||
hfeng-pmm3 | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 73.1707 | 11 | 1 | 11 | 0 | 0 | ||
hfeng-pmm3 | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 9 | 0 | 9 | 0 | 0 | ||
hfeng-pmm3 | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.8272 | 88.3721 | 100.0000 | 78.3641 | 76 | 10 | 82 | 0 | 0 | ||
hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 18 | 0 | 20 | 0 | 0 | ||
hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 91.3043 | 24 | 0 | 24 | 0 | 0 | ||
hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4350 | 98.8764 | 100.0000 | 79.4632 | 176 | 2 | 176 | 0 | 0 | ||
hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.0654 | 98.1481 | 100.0000 | 78.2881 | 106 | 2 | 104 | 0 | 0 | ||
hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.7296 | 35 | 0 | 37 | 0 | 0 | ||
hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 84.0183 | 35 | 0 | 35 | 0 | 0 | ||
hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 73.3533 | 89 | 0 | 89 | 0 | 0 | ||
hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 72.1053 | 53 | 0 | 53 | 0 | 0 |