PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
81851-81900 / 86044 show all
qzeng-customSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
96.2963
10100
qzeng-customSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
94.1176
88.8889
100.0000
95.1220
81800
qzeng-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
qzeng-customSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
99.0099
10100
qzeng-customSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.8095
10100
qzeng-customSNPtvmap_l100_m0_e0hetalt
81.4815
68.7500
100.0000
92.3077
1151100
qzeng-customSNPtvmap_l100_m1_e0hetalt
81.1594
68.2927
100.0000
88.6179
28132800
qzeng-customSNPtvmap_l100_m2_e0hetalt
81.6901
69.0476
100.0000
89.1791
29132900
qzeng-customSNPtvmap_l100_m2_e1hetalt
82.1918
69.7674
100.0000
88.8476
30133000
qzeng-customSNPtvmap_l125_m0_e0hetalt
61.5385
44.4444
100.0000
96.6942
45400
qzeng-customSNPtvmap_l125_m1_e0hetalt
80.0000
66.6667
100.0000
89.7959
20102000
qzeng-customSNPtvmap_l125_m2_e0hetalt
80.0000
66.6667
100.0000
91.1111
20102000
qzeng-customSNPtvmap_l125_m2_e1hetalt
80.0000
66.6667
100.0000
91.1111
20102000
qzeng-customSNPtvmap_l150_m0_e0hetalt
80.0000
66.6667
100.0000
98.0392
21200
qzeng-customSNPtvmap_l150_m1_e0hetalt
75.0000
60.0000
100.0000
92.6829
1281200
qzeng-customSNPtvmap_l150_m2_e0hetalt
75.0000
60.0000
100.0000
93.6842
1281200
qzeng-customSNPtvmap_l150_m2_e1hetalt
75.0000
60.0000
100.0000
93.7173
1281200
qzeng-customSNPtvmap_l250_m1_e0hetalt
40.0000
25.0000
100.0000
99.0991
13100
qzeng-customSNPtvmap_l250_m2_e0hetalt
57.1429
40.0000
100.0000
98.3740
23200
qzeng-customSNPtvmap_l250_m2_e1hetalt
57.1429
40.0000
100.0000
98.3871
23200
qzeng-customSNPtvsegduphetalt
100.0000
100.0000
100.0000
97.9228
70700
raldana-dualsentieonINDEL*decoy*
100.0000
100.0000
100.0000
99.9200
1001000
raldana-dualsentieonINDEL*decoyhet
100.0000
100.0000
100.0000
99.9259
60600
raldana-dualsentieonINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8020
10100
raldana-dualsentieonINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9232
30300
raldana-dualsentieonINDEL*func_cdshetalt
88.8889
80.0000
100.0000
60.0000
41400
raldana-dualsentieonINDEL*func_cdshomalt
100.0000
100.0000
100.0000
36.3380
226022600
raldana-dualsentieonINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
95.6522
91.6667
100.0000
99.2450
1111100
raldana-dualsentieonINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.2500
30300
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
90.1316
82.0359
100.0000
68.2540
1373014000
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.2816
1001000
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.7143
30300
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
96.6741
93.5622
100.0000
75.4425
2181522200
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
97.6744
95.4545
100.0000
78.8079
126612800
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
80.0000
66.6667
100.0000
97.9167
21200
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
66.6667
50.0000
100.0000
98.4615
11100
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
95.2381
10100
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
82.8264
70.6869
100.0000
30.6648
88536797000
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
97.6077
95.3271
100.0000
72.7898
5102551400
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
82.4324
70.1149
100.0000
99.9146
61266000
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.8747
1601600
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.3128
96.6816
100.0000
40.4561
259389261100
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
99.0153
98.0498
100.0000
28.0159
9051890700
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
96.2656
92.8000
100.0000
27.7778
116911700
raldana-dualsentieonINDEL*map_l100_m0_e0hetalt
95.2381
90.9091
100.0000
88.7273
3033100
raldana-dualsentieonINDEL*map_l100_m1_e0hetalt
93.5622
87.9032
100.0000
83.7758
1091511000
raldana-dualsentieonINDEL*map_l100_m2_e0hetalt
93.6170
88.0000
100.0000
84.7826
1101511200
raldana-dualsentieonINDEL*map_l100_m2_e1hetalt
93.5484
87.8788
100.0000
84.6354
1161611800
raldana-dualsentieonINDEL*map_l125_m0_e0hetalt
95.2381
90.9091
100.0000
94.2197
1011000
raldana-dualsentieonINDEL*map_l125_m1_e0hetalt
94.7368
90.0000
100.0000
90.5013
3643600