PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
81501-81550 / 86044 show all
ndellapenna-hhgaSNPtimap_l250_m1_e0hetalt
66.6667
50.0000
100.0000
93.1034
22200
ndellapenna-hhgaSNPtimap_l250_m2_e0hetalt
75.0000
60.0000
100.0000
91.4286
32300
ndellapenna-hhgaSNPtimap_l250_m2_e1hetalt
75.0000
60.0000
100.0000
91.4286
32300
ndellapenna-hhgaSNPtisegduphetalt
100.0000
100.0000
100.0000
99.0698
20200
ndellapenna-hhgaSNPtitech_badpromoters*
100.0000
100.0000
100.0000
45.8599
8508500
ndellapenna-hhgaSNPtitech_badpromotershet
100.0000
100.0000
100.0000
45.6790
4404400
ndellapenna-hhgaSNPtitech_badpromotershomalt
100.0000
100.0000
100.0000
46.0526
4104100
ndellapenna-hhgaSNPtvHG002compoundhethetalt
99.3579
98.7239
100.0000
23.5400
8511185100
ndellapenna-hhgaSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
60.0000
1001000
ndellapenna-hhgaSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
26.5517
17040170400
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
91.5730
1501500
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
88.8889
10100
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.6154
20200
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
81.8182
20200
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.2381
30300
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
91.5730
1501500
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.0000
10100
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_diTR_51to200het
78.5714
64.7059
100.0000
96.3333
1161100
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
73.6842
50500
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
90.9091
83.3333
100.0000
95.0617
51400
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
75.0000
10100
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.0392
10100
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
97.5000
10100
ndellapenna-hhgaSNPtvmap_l125_m0_e0hetalt
87.5000
77.7778
100.0000
86.5385
72700
ndellapenna-hhgaSNPtvmap_l125_m1_e0hetalt
90.9091
83.3333
100.0000
79.1667
2552500
ndellapenna-hhgaSNPtvmap_l125_m2_e0hetalt
90.9091
83.3333
100.0000
82.3944
2552500
ndellapenna-hhgaSNPtvmap_l125_m2_e1hetalt
90.9091
83.3333
100.0000
82.5175
2552500
ndellapenna-hhgaSNPtvmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
93.1818
30300
ndellapenna-hhgaSNPtvmap_l150_m1_e0hetalt
88.8889
80.0000
100.0000
82.9787
1641600
ndellapenna-hhgaSNPtvmap_l150_m2_e0hetalt
88.8889
80.0000
100.0000
85.7143
1641600
ndellapenna-hhgaSNPtvmap_l150_m2_e1hetalt
88.8889
80.0000
100.0000
85.8407
1641600
ndellapenna-hhgaSNPtvmap_l250_m1_e0hetalt
66.6667
50.0000
100.0000
95.4545
22200
ndellapenna-hhgaSNPtvmap_l250_m2_e0hetalt
75.0000
60.0000
100.0000
94.6429
32300
ndellapenna-hhgaSNPtvmap_l250_m2_e1hetalt
75.0000
60.0000
100.0000
94.6429
32300
ndellapenna-hhgaSNPtvsegduphetalt
100.0000
100.0000
100.0000
97.7564
70700
qzeng-customINDEL*func_cdshetalt
75.0000
60.0000
100.0000
33.3333
32200
qzeng-customINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
75.0000
60.0000
100.0000
99.6055
32400
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
83.6237
71.8563
100.0000
63.5714
120475100
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
66.6667
50.0000
100.0000
99.5964
22400
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
91.1215
83.6910
100.0000
74.7801
195388600
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
92.2449
85.6061
100.0000
78.4553
113195300
qzeng-customINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
59.6413
42.4920
100.0000
90.0000
532720100
qzeng-customINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
87.3874
77.6000
100.0000
66.6667
9728100
qzeng-customINDEL*map_l100_m0_e0hetalt
91.8033
84.8485
100.0000
94.3038
285900
qzeng-customINDEL*map_l100_m1_e0hetalt
86.2385
75.8065
100.0000
90.2527
94302700
qzeng-customINDEL*map_l100_m2_e0hetalt
85.8447
75.2000
100.0000
91.2621
94312700
qzeng-customINDEL*map_l100_m2_e1hetalt
85.7143
75.0000
100.0000
91.4013
99332700
qzeng-customINDEL*map_l125_m0_e0hetalt
84.2105
72.7273
100.0000
97.6190
83300
qzeng-customINDEL*map_l125_m1_e0hetalt
87.3239
77.5000
100.0000
92.6941
3191600