PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
81451-81500 / 86044 show all
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.6154
20200
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
81.8182
20200
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.2381
30300
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
91.5730
1501500
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.0000
10100
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
73.6842
50500
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
86.1111
75.6098
100.0000
91.5254
31103000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
75.0000
10100
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_51to200*
87.5000
77.7778
100.0000
96.2733
72600
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_51to200het
92.3077
85.7143
100.0000
96.0630
61500
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
97.0588
11100
ndellapenna-hhgaSNP*map_l125_m0_e0hetalt
87.5000
77.7778
100.0000
86.5385
72700
ndellapenna-hhgaSNP*map_l125_m1_e0hetalt
90.9091
83.3333
100.0000
79.1667
2552500
ndellapenna-hhgaSNP*map_l125_m2_e0hetalt
90.9091
83.3333
100.0000
82.3944
2552500
ndellapenna-hhgaSNP*map_l125_m2_e1hetalt
90.9091
83.3333
100.0000
82.5175
2552500
ndellapenna-hhgaSNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
93.1818
30300
ndellapenna-hhgaSNP*map_l150_m1_e0hetalt
88.8889
80.0000
100.0000
82.9787
1641600
ndellapenna-hhgaSNP*map_l150_m2_e0hetalt
88.8889
80.0000
100.0000
85.7143
1641600
ndellapenna-hhgaSNP*map_l150_m2_e1hetalt
88.8889
80.0000
100.0000
85.8407
1641600
ndellapenna-hhgaSNP*map_l250_m1_e0hetalt
66.6667
50.0000
100.0000
95.4545
22200
ndellapenna-hhgaSNP*map_l250_m2_e0hetalt
75.0000
60.0000
100.0000
94.6429
32300
ndellapenna-hhgaSNP*map_l250_m2_e1hetalt
75.0000
60.0000
100.0000
94.6429
32300
ndellapenna-hhgaSNP*segduphetalt
100.0000
100.0000
100.0000
97.7564
70700
ndellapenna-hhgaSNPtiHG002compoundhethetalt
99.3043
98.6183
100.0000
23.0458
571857100
ndellapenna-hhgaSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
57.8947
80800
ndellapenna-hhgaSNPtifunc_cdshomalt
99.9810
99.9621
100.0000
20.8377
52732527300
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
90.0000
1201200
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.9113
99.8227
100.0000
54.1531
11262112600
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
83.3333
10100
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
10100
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.7143
10100
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
94.7368
20200
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
90.0000
1201200
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
91.6667
10100
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
90.9091
83.3333
100.0000
95.2830
51500
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
81.8182
20200
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
85.2459
74.2857
100.0000
90.4762
2692600
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_51to200*
85.7143
75.0000
100.0000
95.4545
62500
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_51to200het
90.9091
83.3333
100.0000
95.4023
51400
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
95.6522
11100
ndellapenna-hhgaSNPtimap_l125_m0_e0hetalt
85.7143
75.0000
100.0000
83.7838
62600
ndellapenna-hhgaSNPtimap_l125_m1_e0hetalt
90.9091
83.3333
100.0000
75.9036
2042000
ndellapenna-hhgaSNPtimap_l125_m2_e0hetalt
90.9091
83.3333
100.0000
80.0000
2042000
ndellapenna-hhgaSNPtimap_l125_m2_e1hetalt
90.9091
83.3333
100.0000
80.1980
2042000
ndellapenna-hhgaSNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
90.3226
30300
ndellapenna-hhgaSNPtimap_l150_m1_e0hetalt
88.8889
80.0000
100.0000
81.2500
1231200
ndellapenna-hhgaSNPtimap_l150_m2_e0hetalt
88.8889
80.0000
100.0000
84.4156
1231200
ndellapenna-hhgaSNPtimap_l150_m2_e1hetalt
88.8889
80.0000
100.0000
84.6154
1231200