PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
81101-81150 / 86044 show all
qzeng-customINDELD1_5map_l125_m2_e0hetalt
84.6154
73.3333
100.0000
97.5610
114100
qzeng-customINDELD1_5map_l125_m2_e1hetalt
84.6154
73.3333
100.0000
97.5610
114100
qzeng-customINDELD1_5map_l250_m0_e0homalt
76.1905
61.5385
100.0000
97.6827
851300
qzeng-customINDELD1_5map_sirenhetalt
90.1961
82.1429
100.0000
94.0476
6915500
qzeng-customINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9948
10100
qzeng-customINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9933
10100
qzeng-customINDELD1_5tech_badpromoters*
100.0000
100.0000
100.0000
44.8276
1901600
qzeng-customINDELD1_5tech_badpromotershet
100.0000
100.0000
100.0000
46.6667
80800
qzeng-customINDELD1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
42.8571
90800
qzeng-customINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
98.4127
10100
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
98.3333
00100
qzeng-customINDELD6_15map_l250_m0_e0homalt
66.6667
50.0000
100.0000
97.5309
11200
qzeng-customINDELD6_15tech_badpromoters*
100.0000
100.0000
100.0000
48.4848
1701700
qzeng-customINDELD6_15tech_badpromotershet
100.0000
100.0000
100.0000
41.1765
1001000
qzeng-customINDELD6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
56.2500
60700
qzeng-customINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
74.4526
59.3023
100.0000
68.1818
51354200
qzeng-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
83.8710
72.2222
100.0000
73.9130
1351200
qzeng-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
90.6250
82.8571
100.0000
80.8219
2961400
qzeng-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
97.4359
95.0000
100.0000
80.0000
191700
qzeng-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
70.3297
54.2373
100.0000
61.4286
32272700
qzeng-customINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
78.2609
64.2857
100.0000
80.4878
1810800
qzeng-customINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
72.2222
56.5217
100.0000
76.0000
1310600
qzeng-customINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50hetalt
91.6667
84.6154
100.0000
44.1860
1124800
qzeng-customINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
66.6667
50.0000
100.0000
77.7778
22200
qzeng-customINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200het
0.0000
0.0000
100.0000
75.0000
02100
qzeng-customINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
100.0000
100.0000
100.0000
50.0000
20100
qzeng-customINDELI16_PLUSmap_l100_m0_e0hetalt
0.0000
0.0000
100.0000
92.8571
01100
qzeng-customINDELI16_PLUSmap_l100_m1_e0hetalt
0.0000
0.0000
100.0000
88.0000
03300
qzeng-customINDELI16_PLUSmap_l100_m2_e0hetalt
0.0000
0.0000
100.0000
90.0000
03300
qzeng-customINDELI16_PLUSmap_l100_m2_e1hetalt
0.0000
0.0000
100.0000
90.3226
03300
qzeng-customINDELI16_PLUSmap_l125_m1_e0hetalt
0.0000
0.0000
100.0000
90.9091
03200
qzeng-customINDELI16_PLUSmap_l125_m2_e0hetalt
0.0000
0.0000
100.0000
92.0000
03200
qzeng-customINDELI16_PLUSmap_l125_m2_e1hetalt
0.0000
0.0000
100.0000
92.3077
03200
qzeng-customINDELI16_PLUSmap_l150_m0_e0homalt
100.0000
100.0000
100.0000
94.4444
10200
qzeng-customINDELI16_PLUSmap_l150_m1_e0hetalt
0.0000
0.0000
100.0000
95.0000
02100
qzeng-customINDELI16_PLUSmap_l150_m2_e0hetalt
0.0000
0.0000
100.0000
95.4545
02100
qzeng-customINDELI16_PLUSmap_l150_m2_e1hetalt
0.0000
0.0000
100.0000
95.6522
02100
qzeng-customINDELI16_PLUSmap_sirenhetalt
76.9231
62.5000
100.0000
84.0909
106700
qzeng-customINDELI16_PLUSsegduphetalt
66.6667
50.0000
100.0000
98.7342
22100
qzeng-customINDELI16_PLUStech_badpromotershomalt
100.0000
100.0000
100.0000
60.0000
20200
qzeng-customINDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
0.0000
20100
qzeng-customINDELI1_5func_cdshomalt
100.0000
100.0000
100.0000
25.6098
119012200
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
85.7143
75.0000
100.0000
58.0247
63213400
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
92.8230
86.6071
100.0000
66.1202
97156200
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
93.8053
88.3333
100.0000
71.2121
5373800
qzeng-customINDELI1_5lowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
0.0000
100.0000
80.0000
00100
qzeng-customINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
96.5630
93.3544
100.0000
65.8940
2952141200
qzeng-customINDELI1_5lowcmp_SimpleRepeat_triTR_51to200*
86.3636
76.0000
100.0000
78.9474
196400
qzeng-customINDELI1_5lowcmp_SimpleRepeat_triTR_51to200het
66.6667
50.0000
100.0000
75.0000
11400
qzeng-customINDELI1_5map_l100_m0_e0hetalt
80.0000
66.6667
100.0000
92.1739
63900