PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80401-80450 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 62.5000 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | HG002complexvar | hetalt | 99.5138 | 99.0323 | 100.0000 | 35.3684 | 307 | 3 | 307 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | HG002compoundhet | hetalt | 99.7674 | 99.5360 | 100.0000 | 22.0708 | 858 | 4 | 858 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | func_cds | homalt | 99.9928 | 99.9857 | 100.0000 | 20.6414 | 6978 | 1 | 6978 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 81.5385 | 12 | 1 | 12 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.1485 | 15 | 0 | 15 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.9067 | 99.8135 | 100.0000 | 43.3110 | 1606 | 3 | 1606 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9778 | 99.9556 | 100.0000 | 51.6849 | 2251 | 1 | 2251 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 57.2621 | 1383 | 0 | 1383 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.1485 | 15 | 0 | 15 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.4865 | 76.1905 | 100.0000 | 97.2996 | 32 | 10 | 32 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 97.8261 | 18 | 9 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 96.5517 | 93.3333 | 100.0000 | 96.0563 | 14 | 1 | 14 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.4286 | 71.5686 | 100.0000 | 93.4470 | 73 | 29 | 73 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 88.8889 | 100.0000 | 95.6522 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 95.4198 | 6 | 1 | 6 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2264 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 9 | 0 | 9 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 72.2772 | 28 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 72.5490 | 28 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 74.2857 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 77.2152 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 77.5000 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.8049 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.0952 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2766 | 7 | 0 | 7 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | tech_badpromoters | het | 98.0132 | 96.1039 | 100.0000 | 46.3768 | 74 | 3 | 74 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | HG002complexvar | hetalt | 99.5146 | 99.0338 | 100.0000 | 34.5048 | 205 | 2 | 205 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | HG002compoundhet | hetalt | 99.8270 | 99.6546 | 100.0000 | 21.4966 | 577 | 2 | 577 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | func_cds | homalt | 99.9905 | 99.9810 | 100.0000 | 19.3825 | 5274 | 1 | 5274 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7543 | 99.5098 | 100.0000 | 58.1874 | 1218 | 6 | 1218 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 86.8421 | 5 | 1 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.2500 | 12 | 0 | 12 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.8668 | 99.7340 | 100.0000 | 42.5727 | 1125 | 3 | 1125 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9659 | 99.9318 | 100.0000 | 43.3050 | 1465 | 1 | 1465 | 0 | 0 | ||