PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
79251-79300 / 86044 show all
jpowers-varprowlSNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
97.4576
60600
jpowers-varprowlSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
94.1176
88.8889
100.0000
96.9697
81800
jpowers-varprowlSNPtvtech_badpromotershomalt
98.7013
97.4359
100.0000
56.8182
3813800
ltrigg-rtg1INDEL*decoy*
94.7368
90.0000
100.0000
99.8991
911100
ltrigg-rtg1INDEL*decoyhet
90.9091
83.3333
100.0000
99.8908
51700
ltrigg-rtg1INDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8440
10100
ltrigg-rtg1INDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9201
30300
ltrigg-rtg1INDEL*func_cdshetalt
88.8889
80.0000
100.0000
75.0000
41500
ltrigg-rtg1INDEL*func_cdshomalt
99.7783
99.5575
100.0000
30.7692
225122500
ltrigg-rtg1INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.9310
30300
ltrigg-rtg1INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
75.0000
60.0000
100.0000
99.6795
32300
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.7778
30300
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
66.6667
50.0000
100.0000
99.7849
22200
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7778
99.5565
100.0000
70.0067
13476134100
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
95.3125
30300
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
95.7447
20200
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
83.3333
10100
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
87.7419
78.1609
100.0000
99.8911
68196800
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
95.0000
90.4762
100.0000
99.9546
1922000
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
94.9580
90.4000
100.0000
36.3128
1131211400
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
38.9610
4704700
ltrigg-rtg1INDEL*map_l125_m0_e0hetalt
95.2381
90.9091
100.0000
96.6197
1011200
ltrigg-rtg1INDEL*map_l125_m1_e0hetalt
94.7368
90.0000
100.0000
94.8579
3643800
ltrigg-rtg1INDEL*map_l125_m2_e0hetalt
93.6709
88.0952
100.0000
95.2670
3753900
ltrigg-rtg1INDEL*map_l125_m2_e1hetalt
92.5000
86.0465
100.0000
95.3349
3763900
ltrigg-rtg1INDEL*map_l150_m0_e0hetalt
94.1176
88.8889
100.0000
96.5278
811000
ltrigg-rtg1INDEL*map_l150_m1_e0hetalt
92.3077
85.7143
100.0000
96.5889
1831900
ltrigg-rtg1INDEL*map_l150_m2_e0hetalt
92.3077
85.7143
100.0000
96.9745
1831900
ltrigg-rtg1INDEL*map_l150_m2_e1hetalt
90.4762
82.6087
100.0000
96.8750
1942000
ltrigg-rtg1INDEL*map_l250_m0_e0homalt
100.0000
100.0000
100.0000
96.9977
2502600
ltrigg-rtg1INDEL*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
98.4802
60500
ltrigg-rtg1INDEL*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.7013
60500
ltrigg-rtg1INDEL*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.7277
60500
ltrigg-rtg1INDEL*segduphetalt
95.1613
90.7692
100.0000
95.6911
1181212500
ltrigg-rtg1INDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9964
10100
ltrigg-rtg1INDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9933
10100
ltrigg-rtg1INDEL*tech_badpromotershetalt
100.0000
100.0000
100.0000
55.5556
40400
ltrigg-rtg1INDEL*tech_badpromotershomalt
98.4615
96.9697
100.0000
54.2857
3213200
ltrigg-rtg1INDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
97.8723
00200
ltrigg-rtg1INDELC16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
96.2766
00700
ltrigg-rtg1INDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
0.0000
0.0000
100.0000
96.6038
00900
ltrigg-rtg1INDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
94.4444
00100
ltrigg-rtg1INDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
96.7742
00100
ltrigg-rtg1INDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
0.0000
0.0000
100.0000
98.7805
00100
ltrigg-rtg1INDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
98.2456
00100
ltrigg-rtg1INDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
95.5128
00700
ltrigg-rtg1INDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
94.1176
00900
ltrigg-rtg1INDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
94.0000
00600
ltrigg-rtg1INDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
95.8549
00800
ltrigg-rtg1INDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
100.0000
96.6038
00900