PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
78951-79000 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 94.0000 | 88.6792 | 100.0000 | 59.8131 | 47 | 6 | 43 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 51.2821 | 19 | 1 | 19 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 72.8814 | 16 | 0 | 16 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.4673 | 87.7358 | 100.0000 | 72.8814 | 93 | 13 | 96 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.5017 | 79.3750 | 100.0000 | 76.3916 | 127 | 33 | 123 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 50.0000 | 100.0000 | 90.0000 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 90.9091 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 87.5000 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5517 | 93.3333 | 100.0000 | 65.9574 | 14 | 1 | 16 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.4815 | 4 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 84.4444 | 73.0769 | 100.0000 | 84.7328 | 19 | 7 | 20 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 95.4545 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 85.0000 | 73.9130 | 100.0000 | 77.7778 | 17 | 6 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 93.3333 | 87.5000 | 100.0000 | 68.4211 | 14 | 2 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 91.6667 | 84.6154 | 100.0000 | 71.1111 | 11 | 2 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 75.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 88.8889 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 75.0000 | 60.0000 | 100.0000 | 81.2500 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 75.0000 | 60.0000 | 100.0000 | 86.9565 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 75.0000 | 60.0000 | 100.0000 | 86.9565 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 87.5000 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_siren | hetalt | 76.9231 | 62.5000 | 100.0000 | 83.3333 | 10 | 6 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | segdup | * | 95.5556 | 91.4894 | 100.0000 | 89.7375 | 43 | 4 | 43 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | segdup | het | 95.6522 | 91.6667 | 100.0000 | 88.0208 | 22 | 2 | 23 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.1698 | 3 | 1 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 85.9504 | 18 | 1 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 24.6835 | 119 | 0 | 119 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.6492 | 95.4064 | 100.0000 | 61.3043 | 270 | 13 | 267 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.9003 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7500 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4772 | 97.0000 | 100.0000 | 56.4626 | 194 | 6 | 192 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8994 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7179 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4742 | 98.9540 | 100.0000 | 69.2510 | 473 | 5 | 468 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 99.1597 | 98.3333 | 100.0000 | 88.4157 | 59 | 1 | 68 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7101 | 99.4220 | 100.0000 | 73.1707 | 344 | 2 | 341 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.5414 | 91.4634 | 100.0000 | 66.2100 | 75 | 7 | 74 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 92.0000 | 85.1852 | 100.0000 | 72.8261 | 23 | 4 | 25 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.6891 | 99.3802 | 100.0000 | 59.1393 | 962 | 6 | 959 | 0 | 0 | ||