PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
78251-78300 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 72.0000 | 56.2500 | 100.0000 | 98.4375 | 9 | 7 | 9 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 72.0000 | 56.2500 | 100.0000 | 98.4402 | 9 | 7 | 9 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.5842 | 2 | 0 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4106 | 3 | 1 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4163 | 3 | 1 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4163 | 3 | 1 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 99.3665 | 7 | 0 | 7 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.9231 | 7 | 0 | 7 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 99.8624 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 99.7567 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.7475 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.7500 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_siren | homalt | 64.0000 | 47.0588 | 100.0000 | 97.5309 | 16 | 18 | 16 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | segdup | homalt | 90.9091 | 83.3333 | 100.0000 | 93.6709 | 10 | 2 | 10 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | tech_badpromoters | * | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 2 | 2 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | tech_badpromoters | het | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 2 | 2 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9682 | 3 | 1 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9748 | 2 | 0 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9330 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | func_cds | homalt | 92.7536 | 86.4865 | 100.0000 | 23.8095 | 64 | 10 | 64 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.7416 | 1 | 1 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.7319 | 1 | 1 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.6486 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.3333 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | map_l250_m0_e0 | homalt | 91.6667 | 84.6154 | 100.0000 | 97.0976 | 11 | 2 | 11 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9938 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9920 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | tech_badpromoters | homalt | 80.0000 | 66.6667 | 100.0000 | 40.0000 | 6 | 3 | 6 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | func_cds | homalt | 80.0000 | 66.6667 | 100.0000 | 60.0000 | 8 | 4 | 8 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 66.6667 | 50.0000 | 100.0000 | 99.0521 | 2 | 2 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.8304 | 2 | 0 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 9.0909 | 4.7619 | 100.0000 | 83.3333 | 1 | 20 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l100_m0_e0 | homalt | 82.9268 | 70.8333 | 100.0000 | 87.0229 | 17 | 7 | 17 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l100_m1_e0 | homalt | 83.6364 | 71.8750 | 100.0000 | 80.6723 | 46 | 18 | 46 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e0 | homalt | 83.9286 | 72.3077 | 100.0000 | 81.8533 | 47 | 18 | 47 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e1 | homalt | 82.4561 | 70.1493 | 100.0000 | 82.4627 | 47 | 20 | 47 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l125_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 90.3226 | 9 | 3 | 9 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l125_m1_e0 | homalt | 88.5246 | 79.4118 | 100.0000 | 84.0237 | 27 | 7 | 27 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e0 | homalt | 89.2308 | 80.5556 | 100.0000 | 84.5745 | 29 | 7 | 29 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e1 | homalt | 87.8788 | 78.3784 | 100.0000 | 84.8168 | 29 | 8 | 29 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l150_m0_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 92.2078 | 6 | 1 | 6 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l150_m1_e0 | homalt | 86.9565 | 76.9231 | 100.0000 | 85.1852 | 20 | 6 | 20 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e0 | homalt | 88.0000 | 78.5714 | 100.0000 | 85.8065 | 22 | 6 | 22 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e1 | homalt | 86.2745 | 75.8621 | 100.0000 | 85.9873 | 22 | 7 | 22 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.8417 | 6 | 0 | 6 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.2301 | 4 | 0 | 4 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 2 | 0 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 5 | 0 | 5 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.1818 | 6 | 0 | 6 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 6 | 0 | 6 | 0 | 0 | ||