PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
77851-77900 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9930 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9828 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.1176 | 88.8889 | 100.0000 | 98.8473 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1132 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 60.6061 | 13 | 0 | 13 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | func_cds | homalt | 75.0000 | 60.0000 | 100.0000 | 30.7692 | 9 | 6 | 9 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 39.3617 | 24.5033 | 100.0000 | 15.9091 | 37 | 114 | 37 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 37.5000 | 23.0769 | 100.0000 | 71.4286 | 3 | 10 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 28.5714 | 16.6667 | 100.0000 | 0.0000 | 2 | 10 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 89.0909 | 6 | 6 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l100_m1_e0 | homalt | 82.1429 | 69.6970 | 100.0000 | 83.8028 | 23 | 10 | 23 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e0 | homalt | 82.1429 | 69.6970 | 100.0000 | 85.8896 | 23 | 10 | 23 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e1 | homalt | 82.1429 | 69.6970 | 100.0000 | 86.3095 | 23 | 10 | 23 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 92.5000 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m1_e0 | homalt | 84.6154 | 73.3333 | 100.0000 | 88.4211 | 11 | 4 | 11 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e0 | homalt | 84.6154 | 73.3333 | 100.0000 | 89.9083 | 11 | 4 | 11 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e1 | homalt | 84.6154 | 73.3333 | 100.0000 | 90.4348 | 11 | 4 | 11 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m0_e0 | het | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 93.7500 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m1_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 94.4444 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 95.2941 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e1 | homalt | 76.9231 | 62.5000 | 100.0000 | 94.5055 | 5 | 3 | 5 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 94.9495 | 5 | 2 | 5 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | het | 85.7143 | 75.0000 | 100.0000 | 94.4444 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 94.8718 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e0 | * | 85.7143 | 75.0000 | 100.0000 | 94.6903 | 6 | 2 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e0 | het | 88.8889 | 80.0000 | 100.0000 | 93.4426 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 95.6522 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e1 | * | 85.7143 | 75.0000 | 100.0000 | 95.0413 | 6 | 2 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e1 | het | 88.8889 | 80.0000 | 100.0000 | 94.0299 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 95.8333 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | tech_badpromoters | * | 91.6667 | 84.6154 | 100.0000 | 45.0000 | 11 | 2 | 11 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | tech_badpromoters | het | 92.3077 | 85.7143 | 100.0000 | 45.4545 | 6 | 1 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | tech_badpromoters | hetalt | 80.0000 | 66.6667 | 100.0000 | 33.3333 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | map_l125_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.7020 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | map_l125_m0_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 93.2692 | 7 | 1 | 7 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | map_l125_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.7020 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | decoy | * | 46.1538 | 30.0000 | 100.0000 | 99.9940 | 3 | 7 | 2 | 0 | 0 | ||