PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
77501-77550 / 86044 show all
hfeng-pmm1INDELD1_5tech_badpromotershet
93.3333
87.5000
100.0000
46.1538
71700
hfeng-pmm1INDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
20200
hfeng-pmm1INDELD1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
43.7500
90900
hfeng-pmm1INDELD6_15decoy*
100.0000
100.0000
100.0000
99.8942
10100
hfeng-pmm1INDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.0991
10100
hfeng-pmm1INDELD6_15func_cds*
100.0000
100.0000
100.0000
50.0000
4304300
hfeng-pmm1INDELD6_15func_cdshet
100.0000
100.0000
100.0000
46.2963
2902900
hfeng-pmm1INDELD6_15func_cdshetalt
100.0000
100.0000
100.0000
60.0000
20200
hfeng-pmm1INDELD6_15func_cdshomalt
100.0000
100.0000
100.0000
55.5556
1201200
hfeng-pmm1INDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
96.4912
60600
hfeng-pmm1INDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.2477
30300
hfeng-pmm1INDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
hfeng-pmm1INDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
97.6190
10100
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
91.6667
84.6154
100.0000
60.7143
3363300
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.8235
97.6744
100.0000
76.4045
4214200
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.2973
40400
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.9381
20200
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.6154
20200
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
98.1481
96.3636
100.0000
63.2653
5325400
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8661
99.7326
100.0000
58.3705
373137300
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
98.4615
96.9697
100.0000
62.9213
3213300
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
56.3613
343034300
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
91.3043
20200
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
91.6667
10100
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
75.0000
10100
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
99.4329
98.8722
100.0000
80.9005
263326300
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
99.0228
98.0645
100.0000
82.8442
152315200
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
62.6263
3703700
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
81.1224
7407400
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
89.3204
80.7018
100.0000
99.3925
46114600
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
84.9315
73.8095
100.0000
99.2867
31113100
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.2221
90900
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.7100
60600
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
99.3614
98.7310
100.0000
27.9729
116715116900
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.4836
98.9726
100.0000
18.6798
578657900
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.8870
99.7743
100.0000
31.3665
442144200
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
97.8947
95.8763
100.0000
22.5000
9349300
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
30.0000
2102100
hfeng-pmm1INDELD6_15map_l100_m0_e0hetalt
97.2973
94.7368
100.0000
82.3529
1811800
hfeng-pmm1INDELD6_15map_l100_m0_e0homalt
97.8723
95.8333
100.0000
87.8307
2312300
hfeng-pmm1INDELD6_15map_l100_m1_e0hetalt
95.3846
91.1765
100.0000
73.5043
6266200
hfeng-pmm1INDELD6_15map_l100_m1_e0homalt
98.4127
96.8750
100.0000
83.3333
6226200
hfeng-pmm1INDELD6_15map_l100_m2_e0hetalt
95.3846
91.1765
100.0000
75.0000
6266200
hfeng-pmm1INDELD6_15map_l100_m2_e0homalt
98.4375
96.9231
100.0000
84.0102
6326300
hfeng-pmm1INDELD6_15map_l100_m2_e1hetalt
94.9640
90.4110
100.0000
74.9049
6676600
hfeng-pmm1INDELD6_15map_l100_m2_e1homalt
98.4848
97.0149
100.0000
83.9901
6526500
hfeng-pmm1INDELD6_15map_l125_m0_e0*
98.9247
97.8723
100.0000
90.7631
4614600
hfeng-pmm1INDELD6_15map_l125_m0_e0het
98.2456
96.5517
100.0000
90.8497
2812800
hfeng-pmm1INDELD6_15map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
89.6552
60600
hfeng-pmm1INDELD6_15map_l125_m0_e0homalt
100.0000
100.0000
100.0000
91.0448
1201200