PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
77501-77550 / 86044 show all | |||||||||||||||
hfeng-pmm1 | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 46.1538 | 7 | 1 | 7 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.8942 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0991 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 43 | 0 | 43 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 46.2963 | 29 | 0 | 29 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 12 | 0 | 12 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 96.4912 | 6 | 0 | 6 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.2477 | 3 | 0 | 3 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6190 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.6667 | 84.6154 | 100.0000 | 60.7143 | 33 | 6 | 33 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8235 | 97.6744 | 100.0000 | 76.4045 | 42 | 1 | 42 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 4 | 0 | 4 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.9381 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.1481 | 96.3636 | 100.0000 | 63.2653 | 53 | 2 | 54 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8661 | 99.7326 | 100.0000 | 58.3705 | 373 | 1 | 373 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.4615 | 96.9697 | 100.0000 | 62.9213 | 32 | 1 | 33 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 56.3613 | 343 | 0 | 343 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 91.3043 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4329 | 98.8722 | 100.0000 | 80.9005 | 263 | 3 | 263 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0228 | 98.0645 | 100.0000 | 82.8442 | 152 | 3 | 152 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 62.6263 | 37 | 0 | 37 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.1224 | 74 | 0 | 74 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 89.3204 | 80.7018 | 100.0000 | 99.3925 | 46 | 11 | 46 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 84.9315 | 73.8095 | 100.0000 | 99.2867 | 31 | 11 | 31 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.2221 | 9 | 0 | 9 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.7100 | 6 | 0 | 6 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.3614 | 98.7310 | 100.0000 | 27.9729 | 1167 | 15 | 1169 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.4836 | 98.9726 | 100.0000 | 18.6798 | 578 | 6 | 579 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8870 | 99.7743 | 100.0000 | 31.3665 | 442 | 1 | 442 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 22.5000 | 93 | 4 | 93 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 30.0000 | 21 | 0 | 21 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 82.3529 | 18 | 1 | 18 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 87.8307 | 23 | 1 | 23 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 73.5043 | 62 | 6 | 62 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | map_l100_m1_e0 | homalt | 98.4127 | 96.8750 | 100.0000 | 83.3333 | 62 | 2 | 62 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 75.0000 | 62 | 6 | 62 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 84.0102 | 63 | 2 | 63 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 94.9640 | 90.4110 | 100.0000 | 74.9049 | 66 | 7 | 66 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.4848 | 97.0149 | 100.0000 | 83.9901 | 65 | 2 | 65 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | map_l125_m0_e0 | * | 98.9247 | 97.8723 | 100.0000 | 90.7631 | 46 | 1 | 46 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 90.8497 | 28 | 1 | 28 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.6552 | 6 | 0 | 6 | 0 | 0 | ||
hfeng-pmm1 | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.0448 | 12 | 0 | 12 | 0 | 0 |