PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
76651-76700 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | * | segdupwithalt | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9987 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 48.6667 | 80 | 0 | 77 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9935 | 0 | 0 | 5 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | decoy | het | 0.0000 | 0.0000 | 100.0000 | 99.9962 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9871 | 0 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 57.6923 | 8 | 0 | 33 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | func_cds | homalt | 99.9810 | 99.9621 | 100.0000 | 20.7688 | 5273 | 2 | 5215 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 91.2088 | 0 | 0 | 8 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.2105 | 1 | 0 | 12 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 82.0513 | 1 | 0 | 7 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.8696 | 1 | 0 | 52 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.2381 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 1 | 0 | 14 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.8705 | 14 | 0 | 113 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0988 | 8 | 0 | 63 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.5456 | 24 | 0 | 160 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.4885 | 24 | 0 | 173 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.2308 | 24 | 0 | 176 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.1726 | 3 | 0 | 43 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.8157 | 15 | 0 | 104 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.2861 | 15 | 0 | 113 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.0679 | 15 | 0 | 115 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 94.3182 | 0 | 0 | 5 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.8571 | 4 | 0 | 23 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.8293 | 5 | 0 | 27 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.0813 | 5 | 0 | 27 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | segdupwithalt | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9980 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 44.5946 | 41 | 0 | 41 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9914 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | decoy | het | 0.0000 | 0.0000 | 100.0000 | 99.9939 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9851 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.8571 | 10 | 0 | 18 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 26.3664 | 1704 | 0 | 1684 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 91.7431 | 0 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 86.2745 | 0 | 0 | 7 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.8696 | 1 | 0 | 13 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 8 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.6744 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.8841 | 2 | 0 | 50 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.4979 | 2 | 0 | 49 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.9478 | 3 | 0 | 65 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.9123 | 1 | 0 | 160 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 100.0000 | 94.1176 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 53.5354 | 1 | 0 | 46 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | segdupwithalt | * | 0.0000 | 0.0000 | 100.0000 | 99.9988 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | segdupwithalt | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9963 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.7500 | 39 | 0 | 37 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | decoy | * | 82.3529 | 70.0000 | 100.0000 | 99.9638 | 7 | 3 | 7 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | decoy | het | 66.6667 | 50.0000 | 100.0000 | 99.9731 | 3 | 3 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9253 | 3 | 0 | 3 | 0 | 0 | ||