PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75651-75700 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8267 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.8880 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | * | func_cds | hetalt | 75.0000 | 60.0000 | 100.0000 | 55.5556 | 3 | 2 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | * | func_cds | homalt | 97.7376 | 95.5752 | 100.0000 | 25.5172 | 216 | 10 | 216 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 82.3529 | 70.0000 | 100.0000 | 99.4125 | 14 | 6 | 14 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 85.7143 | 75.0000 | 100.0000 | 99.5238 | 9 | 3 | 9 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 57.1429 | 40.0000 | 100.0000 | 99.5000 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 86.6667 | 76.4706 | 100.0000 | 99.4338 | 13 | 4 | 13 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 88.8889 | 80.0000 | 100.0000 | 99.5595 | 8 | 2 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.4949 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 33.3333 | 100.0000 | 98.9011 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 50.0000 | 100.0000 | 98.7179 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 84.2593 | 72.8000 | 100.0000 | 24.6032 | 91 | 34 | 95 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 89.4118 | 80.8511 | 100.0000 | 30.9091 | 38 | 9 | 38 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l125_m0_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 95.6790 | 7 | 4 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l150_m0_e0 | hetalt | 71.4286 | 55.5556 | 100.0000 | 96.9925 | 5 | 4 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l150_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.9807 | 14 | 7 | 13 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l150_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.6954 | 14 | 7 | 13 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l150_m2_e1 | hetalt | 78.9474 | 65.2174 | 100.0000 | 95.5414 | 15 | 8 | 14 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l250_m0_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 96.3235 | 10 | 15 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.6667 | 4 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l250_m1_e0 | homalt | 57.5163 | 40.3670 | 100.0000 | 93.4621 | 44 | 65 | 44 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.9011 | 4 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l250_m2_e0 | homalt | 58.0247 | 40.8696 | 100.0000 | 94.2543 | 47 | 68 | 47 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.9529 | 4 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l250_m2_e1 | homalt | 58.5366 | 41.3793 | 100.0000 | 94.3262 | 48 | 68 | 48 | 0 | 0 | ||
| ckim-isaac | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9964 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9949 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | * | tech_badpromoters | * | 92.9577 | 86.8421 | 100.0000 | 48.4127 | 66 | 10 | 65 | 0 | 0 | ||
| ckim-isaac | INDEL | * | tech_badpromoters | het | 94.5946 | 89.7436 | 100.0000 | 48.4375 | 35 | 4 | 33 | 0 | 0 | ||
| ckim-isaac | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 4 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | INDEL | * | tech_badpromoters | homalt | 90.0000 | 81.8182 | 100.0000 | 50.9091 | 27 | 6 | 27 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 98.2405 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 98.2063 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4912 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 56.5217 | 10 | 2 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | func_cds | het | 93.3333 | 87.5000 | 100.0000 | 61.1111 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 40.0000 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 66.6667 | 50.0000 | 100.0000 | 96.7742 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 66.6667 | 50.0000 | 100.0000 | 96.7213 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 73.6842 | 10 | 2 | 15 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.5807 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.6572 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.1304 | 2 | 0 | 2 | 0 | 0 | ||