PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75601-75650 / 86044 show all | |||||||||||||||
| ckim-gatk | SNP | ti | map_l250_m2_e1 | homalt | 64.8875 | 48.0248 | 100.0000 | 93.2374 | 851 | 921 | 851 | 0 | 0 | ||
| ckim-gatk | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.2453 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | SNP | ti | tech_badpromoters | het | 98.8506 | 97.7273 | 100.0000 | 47.5610 | 43 | 1 | 43 | 0 | 0 | ||
| ckim-gatk | SNP | tv | HG002compoundhet | hetalt | 98.8856 | 97.7958 | 100.0000 | 22.8728 | 843 | 19 | 843 | 0 | 0 | ||
| ckim-gatk | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 61.5385 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-gatk | SNP | tv | func_cds | homalt | 99.8236 | 99.6479 | 100.0000 | 25.7867 | 1698 | 6 | 1698 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.9045 | 99.8092 | 100.0000 | 64.1781 | 523 | 1 | 523 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 83.3333 | 12 | 1 | 12 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.2529 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 45.2787 | 481 | 0 | 481 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9363 | 99.8728 | 100.0000 | 61.9302 | 785 | 1 | 785 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.9047 | 99.8095 | 100.0000 | 67.3317 | 524 | 1 | 524 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.7654 | 97.5610 | 100.0000 | 91.7355 | 40 | 1 | 40 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.2529 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 93.8776 | 88.4615 | 100.0000 | 97.0361 | 23 | 3 | 23 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 90.3226 | 82.3529 | 100.0000 | 97.5779 | 14 | 3 | 14 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.4082 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.2222 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7820 | 99.5649 | 100.0000 | 36.1989 | 2746 | 12 | 2746 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.4066 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7706 | 99.5423 | 100.0000 | 34.5537 | 1305 | 6 | 1305 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.5714 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 98.2456 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 72.0000 | 56.2500 | 100.0000 | 92.1053 | 9 | 7 | 9 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 36.3636 | 22.2222 | 100.0000 | 97.9167 | 2 | 7 | 2 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.3462 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.7952 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l150_m0_e0 | homalt | 64.0041 | 47.0633 | 100.0000 | 87.1795 | 625 | 703 | 625 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l150_m1_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 93.8202 | 11 | 9 | 11 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l150_m2_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 94.8357 | 11 | 9 | 11 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l150_m2_e1 | hetalt | 70.9677 | 55.0000 | 100.0000 | 94.8357 | 11 | 9 | 11 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l250_m0_e0 | homalt | 60.6498 | 43.5233 | 100.0000 | 96.8563 | 84 | 109 | 84 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l250_m1_e0 | homalt | 60.1307 | 42.9907 | 100.0000 | 93.6519 | 368 | 488 | 368 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l250_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 99.2366 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l250_m2_e0 | homalt | 61.7994 | 44.7172 | 100.0000 | 93.9099 | 419 | 518 | 419 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 99.2366 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l250_m2_e1 | homalt | 62.1996 | 45.1374 | 100.0000 | 93.8825 | 427 | 519 | 427 | 0 | 0 | ||
| ckim-gatk | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3982 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-gatk | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 54.9296 | 32 | 1 | 32 | 0 | 0 | ||
| ckim-isaac | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9321 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9477 | 6 | 0 | 6 | 0 | 0 | ||