PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75401-75450 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9217 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 100.0000 | 99.9088 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 47.5000 | 42 | 1 | 42 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 43.3962 | 28 | 1 | 30 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 12 | 0 | 12 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 96.5278 | 6 | 0 | 5 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 96.3303 | 3 | 0 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.6190 | 4 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 96.8085 | 2 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 90.9091 | 83.3333 | 100.0000 | 99.7713 | 5 | 1 | 5 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.3820 | 5 | 0 | 5 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.2308 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | segdup | het | 98.3425 | 96.7391 | 100.0000 | 93.1979 | 89 | 3 | 144 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 52.7778 | 17 | 0 | 17 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 54.1667 | 10 | 0 | 11 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 75.5556 | 11 | 1 | 11 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 68.9655 | 9 | 0 | 9 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 88.7850 | 24 | 0 | 24 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7183 | 99.4382 | 100.0000 | 80.1743 | 177 | 1 | 182 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5349 | 99.0741 | 100.0000 | 79.9728 | 107 | 1 | 147 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 80.9783 | 35 | 0 | 35 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 74.7222 | 89 | 0 | 91 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 73.1183 | 53 | 0 | 75 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 80.2469 | 16 | 0 | 16 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 93.5484 | 1 | 1 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.2134 | 45 | 0 | 45 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 79.3814 | 37 | 0 | 40 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 100.0000 | 100.0000 | 100.0000 | 79.0850 | 16 | 0 | 32 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 80.4878 | 8 | 0 | 8 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 66.6667 | 1 | 1 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.2759 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0769 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.8417 | 3 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 3 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0519 | 3 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.9247 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6000 | 3 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 3 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.7941 | 3 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 99.5413 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 99.1667 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 99.5868 | 1 | 0 | 1 | 0 | 0 | ||