PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73701-73750 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.3077 | 2 | 1 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.9394 | 2 | 1 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.1176 | 2 | 1 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.7143 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 2 | 1 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.9091 | 2 | 1 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.9091 | 2 | 1 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 91.6667 | 1 | 1 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.3077 | 1 | 1 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.3077 | 1 | 1 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 87.2000 | 15 | 1 | 16 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 96.3470 | 24 | 0 | 24 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3510 | 4 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 73.3333 | 4 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.4094 | 119 | 0 | 119 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8636 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 93.6709 | 88.0952 | 100.0000 | 59.3407 | 74 | 10 | 74 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8584 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.1818 | 96.4286 | 100.0000 | 75.1152 | 108 | 4 | 108 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 99.1597 | 98.3333 | 100.0000 | 81.3880 | 59 | 1 | 59 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.7905 | 86.5506 | 100.0000 | 38.2131 | 547 | 85 | 574 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9933 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9843 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7919 | 97.6127 | 100.0000 | 42.4274 | 1104 | 27 | 1110 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.3995 | 94.9309 | 100.0000 | 39.7222 | 206 | 11 | 217 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.6795 | 99.3610 | 100.0000 | 35.0731 | 311 | 2 | 311 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 8.3333 | 22 | 1 | 22 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.9597 | 9 | 0 | 9 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 88.5246 | 42 | 2 | 42 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 89.4207 | 42 | 2 | 42 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 97.7273 | 95.5556 | 100.0000 | 89.3827 | 43 | 2 | 43 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 4 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1452 | 17 | 0 | 17 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.2862 | 19 | 0 | 19 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.4028 | 19 | 0 | 19 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.2128 | 9 | 0 | 9 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8525 | 9 | 0 | 9 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.5157 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 92.8571 | 86.6667 | 100.0000 | 98.5507 | 13 | 2 | 13 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9798 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3871 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.4127 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 87.1765 | 109 | 3 | 109 | 0 | 0 | ||