PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
73601-73650 / 86044 show all | |||||||||||||||
astatham-gatk | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 61.2903 | 12 | 0 | 12 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.1014 | 6 | 0 | 6 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.8261 | 3 | 0 | 3 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 2 | 0 | 2 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 1 | 0 | 1 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 57.6471 | 36 | 3 | 36 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 4 | 0 | 4 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.3471 | 2 | 0 | 2 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 2 | 0 | 2 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 92.5926 | 2 | 0 | 2 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.0388 | 74 | 0 | 74 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1728 | 9 | 0 | 9 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.8090 | 6 | 0 | 6 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6431 | 99.2888 | 100.0000 | 46.4313 | 698 | 5 | 698 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.8285 | 99.6575 | 100.0000 | 18.3473 | 582 | 2 | 583 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 23.1405 | 93 | 4 | 93 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.2353 | 21 | 0 | 21 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 82.3529 | 18 | 1 | 18 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 90.3361 | 23 | 1 | 23 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 96.1832 | 92.6471 | 100.0000 | 72.7273 | 63 | 5 | 63 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l100_m1_e0 | homalt | 98.4127 | 96.8750 | 100.0000 | 86.5510 | 62 | 2 | 62 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 96.1832 | 92.6471 | 100.0000 | 74.2857 | 63 | 5 | 63 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 87.0902 | 63 | 2 | 63 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.7143 | 91.7808 | 100.0000 | 74.1313 | 67 | 6 | 67 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.4848 | 97.0149 | 100.0000 | 87.0518 | 65 | 2 | 65 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 98.9247 | 97.8723 | 100.0000 | 93.9394 | 46 | 1 | 46 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 94.6768 | 28 | 1 | 28 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.4762 | 6 | 0 | 6 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.9412 | 12 | 0 | 12 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 85.1240 | 18 | 1 | 18 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 89.2508 | 33 | 1 | 33 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 86.9565 | 18 | 1 | 18 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 89.3617 | 35 | 1 | 35 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 87.3239 | 18 | 2 | 18 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 89.3175 | 36 | 1 | 36 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 94.8800 | 32 | 0 | 32 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.4128 | 20 | 0 | 20 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3846 | 5 | 0 | 5 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8905 | 7 | 0 | 7 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.8046 | 8 | 0 | 8 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l150_m1_e0 | homalt | 98.0392 | 96.1538 | 100.0000 | 89.4958 | 25 | 1 | 25 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.9192 | 8 | 0 | 8 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 89.8496 | 27 | 1 | 27 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.1569 | 8 | 1 | 8 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 89.6296 | 28 | 1 | 28 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.1763 | 6 | 0 | 6 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.2379 | 4 | 0 | 4 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.4026 | 2 | 0 | 2 | 0 | 0 |