PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73401-73450 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6667 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | tech_badpromoters | het | 98.8506 | 97.7273 | 100.0000 | 48.1928 | 43 | 1 | 43 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.3333 | 10 | 0 | 10 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | func_cds | homalt | 99.7352 | 99.4718 | 100.0000 | 25.3304 | 1695 | 9 | 1695 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6169 | 99.2366 | 100.0000 | 64.2366 | 520 | 4 | 520 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.6872 | 99.3763 | 100.0000 | 45.8664 | 478 | 3 | 478 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8726 | 99.7455 | 100.0000 | 62.0339 | 784 | 2 | 784 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 525 | 0 | 525 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.7654 | 97.5610 | 100.0000 | 91.6667 | 40 | 1 | 40 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 93.7500 | 88.2353 | 100.0000 | 97.4490 | 15 | 2 | 15 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.3846 | 9 | 0 | 9 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6842 | 5 | 0 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3981 | 98.8035 | 100.0000 | 36.3869 | 2725 | 33 | 2729 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 98.5915 | 97.2222 | 100.0000 | 88.4868 | 35 | 1 | 35 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.2584 | 6 | 0 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6940 | 99.3898 | 100.0000 | 34.8326 | 1303 | 8 | 1304 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.5714 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 98.2143 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 31.5789 | 18.7500 | 100.0000 | 95.2381 | 3 | 13 | 3 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l100_m0_e0 | homalt | 37.6187 | 23.1669 | 100.0000 | 87.8146 | 891 | 2955 | 891 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l100_m1_e0 | hetalt | 48.1481 | 31.7073 | 100.0000 | 90.8451 | 13 | 28 | 13 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l100_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.2500 | 14 | 28 | 14 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l100_m2_e1 | hetalt | 51.7241 | 34.8837 | 100.0000 | 90.6832 | 15 | 28 | 15 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 20.0000 | 11.1111 | 100.0000 | 98.1818 | 1 | 8 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l125_m0_e0 | homalt | 28.7587 | 16.7942 | 100.0000 | 93.2501 | 373 | 1848 | 373 | 0 | 0 | ||
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 80.0000 | 66.6667 | 100.0000 | 98.8095 | 2 | 1 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.3871 | 2 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9973 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9956 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 100.0000 | 87.5000 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 83.3333 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 90.0000 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 100.0000 | 92.7928 | 0 | 0 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 85.7143 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 92.5926 | 0 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 91.3043 | 0 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 94.3396 | 0 | 0 | 3 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 92.7928 | 0 | 0 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.6486 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 93.7500 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.9697 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.2222 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.2222 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.1538 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4286 | 0 | 0 | 1 | 0 | 0 | ||