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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
72851-72900 / 86044 show all
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7960
99.6105
99.9822
54.2557
11252441122022
100.0000
hfeng-pmm2SNPtiHG002complexvarhet
99.8373
99.6928
99.9822
16.6591
313799967313749567
12.5000
jli-customSNP*HG002complexvarhomalt
99.9614
99.9404
99.9823
19.9145
2884021722883855137
72.5490
ckim-dragenINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.3380
94.8299
99.9823
61.6765
5631307565911
100.0000
hfeng-pmm1SNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8455
99.7089
99.9825
55.0685
17127501712432
66.6667
hfeng-pmm3SNP*HG002complexvarhet
99.8290
99.6758
99.9825
18.2080
46398815094638598116
19.7531
hfeng-pmm3SNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8513
99.7206
99.9825
55.1444
17129481712632
66.6667
raldana-dualsentieonSNP*HG002complexvar*
99.8769
99.7713
99.9826
18.8281
752656172575251113147
35.8779
hfeng-pmm2SNP*HG002complexvarhomalt
99.9776
99.9726
99.9827
20.0544
288495792884815044
88.0000
hfeng-pmm2SNPtiHG002complexvar*
99.8914
99.8002
99.9829
17.3851
50742010165073618738
43.6782
astatham-gatkSNPtvHG002complexvarhet
98.5778
97.2116
99.9829
21.9634
14652842031464562511
44.0000
hfeng-pmm3INDEL*HG002compoundhethetalt
96.7848
93.7847
99.9831
50.6733
2361515652373142
50.0000
hfeng-pmm2INDEL*HG002compoundhethetalt
96.9221
94.0429
99.9832
52.1234
2368015002379542
50.0000
hfeng-pmm1INDEL*HG002compoundhethetalt
96.9242
94.0469
99.9832
52.2156
2368114992379643
75.0000
jli-customSNPtvHG002complexvarhomalt
99.9542
99.9254
99.9832
22.8543
9504071950291611
68.7500
hfeng-pmm1SNPtvHG002complexvar*
99.8458
99.7087
99.9833
21.6860
2454357172453494120
48.7805
astatham-gatkSNPti**
99.6161
99.2515
99.9833
17.5605
2069900156112069836345101
29.2754
hfeng-pmm3SNPtiHG002complexvarhet
99.8511
99.7192
99.9834
16.8098
3138828843138325210
19.2308
gduggal-bwaplatSNPti*homalt
99.0843
98.2012
99.9834
17.0820
78859314445788346131112
85.4962
ckim-vqsrSNPtimap_sirenhomalt
77.6182
63.4297
99.9834
60.5065
24050138662404444
100.0000
asubramanian-gatkSNPtiHG002complexvar*
98.3380
96.7457
99.9835
17.8536
491890165464918308136
44.4444
ltrigg-rtg1SNPtv*homalt
99.9663
99.9491
99.9836
19.8090
3769291923769636242
67.7419
hfeng-pmm2SNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9754
99.9671
99.9836
54.9478
60862608611
100.0000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.3498
98.7237
99.9839
45.5999
618880619311
100.0000
hfeng-pmm2SNPtiHG002complexvarhomalt
99.9798
99.9757
99.9840
18.5051
193416471934073131
100.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.8722
99.7607
99.9840
43.9807
625315625311
100.0000
hfeng-pmm1SNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.8642
99.7447
99.9840
43.8336
625216625211
100.0000
ckim-vqsrSNP*HG002complexvar*
98.7826
97.6098
99.9840
19.7255
7363501803173620111858
49.1525
ckim-dragenSNPtiHG002complexvarhomalt
99.9527
99.9214
99.9840
18.3095
1933111521934173131
100.0000
jmaeng-gatkSNPtvHG002complexvarhomalt
99.2171
98.4618
99.9840
23.0284
936481463936341513
86.6667
jmaeng-gatkSNPtvmap_l100_m1_e0homalt
82.1629
69.7335
99.9841
67.6746
63062737630611
100.0000
hfeng-pmm3SNPtvHG002complexvar*
99.8576
99.7315
99.9841
21.7544
2454916612454043915
38.4615
cchapple-customSNP*map_l125_m0_e0homalt
97.7145
95.5453
99.9844
64.7518
6413299641111
100.0000
jmaeng-gatkSNPtvmap_l100_m2_e0homalt
82.5067
70.2301
99.9845
69.8682
64712743647111
100.0000
jmaeng-gatkSNP*HG002complexvarhomalt
99.3008
98.6263
99.9845
20.0307
28461039642845864439
88.6364
hfeng-pmm1SNP*HG002complexvarhet
99.8138
99.6436
99.9845
18.0286
46383816594637087219
26.3889
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.3002
94.7561
99.9846
24.3136
6469358647710
0.0000
raldana-dualsentieonSNPtiHG002complexvar*
99.8917
99.7990
99.9846
17.3582
50741410225073547829
37.1795
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.5390
95.2102
99.9846
25.1466
6500327650910
0.0000
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.3545
94.8591
99.9847
25.8525
6532354654410
0.0000
hfeng-pmm3INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.9479
95.9924
99.9847
32.9893
6539273655610
0.0000
astatham-gatkSNPtvHG002complexvar*
99.1122
98.2547
99.9847
22.3181
24185642962417693721
56.7568
jmaeng-gatkSNPtvmap_l100_m2_e1homalt
82.6342
70.4150
99.9847
69.7916
65502752655011
100.0000
jmaeng-gatkSNPtiHG002complexvarhomalt
99.3419
98.7072
99.9848
18.4737
19096225011909522926
89.6552
ltrigg-rtg1SNP**homalt
99.9664
99.9480
99.9848
17.4153
11795436141179482179154
86.0335
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.6291
95.3819
99.9848
25.9951
6568318658110
0.0000
hfeng-pmm1INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.2527
96.5796
99.9848
34.0696
6579233659610
0.0000
cchapple-customSNPtiHG002complexvarhomalt
99.8348
99.6852
99.9849
17.4009
1928546091921842925
86.2069
ckim-vqsrSNPtiHG002complexvar*
98.8535
97.7474
99.9849
18.1351
496983114534969257538
50.6667
astatham-gatkSNP*HG002complexvarhet
98.7010
97.4496
99.9850
18.8713
453625118724534986828
41.1765