PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1446 1447 1448 1449 1450 1451 1452 1453 1454 ... 1720 1721 » 72451-72500 / 86044 show all
jli-custom	INDEL	I6_15	HG002compoundhet	hetalt	97.1767	94.5414	99.9630	28.7734	8071	466	8109	3	3	100.0000
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8338	99.7050	99.9630	71.6940	5407	16	5407	2	2	100.0000
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8338	99.7050	99.9630	71.6940	5407	16	5407	2	2	100.0000
ckim-isaac	SNP	ti	segdup	*	98.3830	96.8521	99.9630	86.8421	18922	615	18922	7	3	42.8571
raldana-dualsentieon	SNP	ti	map_siren	homalt	99.8878	99.8127	99.9630	48.3820	37845	71	37839	14	14	100.0000
ndellapenna-hhga	SNP	ti	HG002complexvar	het	99.7687	99.5752	99.9630	16.8677	313429	1337	313430	116	49	42.2414
mlin-fermikit	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.9381	97.9340	99.9631	55.1737	10855	229	10848	4	0	0.0000
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.5047	99.0504	99.9631	30.7908	2712	26	2712	1	1	100.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6839	99.4064	99.9631	71.3354	21769	130	21655	8	8	100.0000
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5837	99.2071	99.9631	70.9548	5380	43	5419	2	0	0.0000
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5837	99.2071	99.9631	70.9548	5380	43	5419	2	0	0.0000
raldana-dualsentieon	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8164	99.6701	99.9632	59.9499	10875	36	10872	4	3	75.0000
ckim-vqsr	SNP	ti	map_l100_m2_e0	homalt	61.7649	44.6884	99.9633	77.1942	8182	10127	8182	3	3	100.0000
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8538	99.7443	99.9634	32.0149	2731	7	2732	1	0	0.0000
gduggal-bwaplat	SNP	*	map_l125_m1_e0	homalt	65.3285	48.5182	99.9634	78.9108	8202	8703	8195	3	3	100.0000
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8538	99.7443	99.9634	29.9590	2731	7	2732	1	1	100.0000
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8537	99.7443	99.9634	30.7478	2731	7	2731	1	1	100.0000
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9452	99.9270	99.9635	30.8140	2736	2	2736	1	1	100.0000
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9269	99.8904	99.9635	30.9962	2735	3	2735	1	1	100.0000
raldana-dualsentieon	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9452	99.9270	99.9635	30.8140	2736	2	2736	1	1	100.0000
rpoplin-dv42	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9452	99.9270	99.9635	32.1349	2736	2	2736	1	1	100.0000
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8729	99.7825	99.9635	34.6365	2752	6	2741	1	1	100.0000
jli-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9452	99.9270	99.9635	30.9710	2736	2	2736	1	1	100.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	95.7952	91.9607	99.9635	35.1166	5422	474	5480	2	2	100.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	95.7952	91.9607	99.9635	35.1166	5422	474	5480	2	2	100.0000
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9452	99.9270	99.9635	32.6526	2736	2	2736	1	1	100.0000
gduggal-bwaplat	SNP	*	map_l100_m0_e0	homalt	64.1655	47.2461	99.9635	77.1816	5490	6130	5484	2	2	100.0000
gduggal-bwavard	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	98.6729	97.4150	99.9636	52.1934	11004	292	10992	4	3	75.0000
ckim-isaac	SNP	*	*	het	98.6547	97.3796	99.9637	16.8583	1824505	49096	1825101	663	63	9.5023
ckim-isaac	SNP	*	func_cds	het	99.4778	98.9965	99.9638	21.3254	11049	112	11049	4	0	0.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.1530	92.6221	99.9638	35.0611	5461	435	5523	2	2	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.1530	92.6221	99.9638	35.0611	5461	435	5523	2	2	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.1713	92.6560	99.9638	35.0529	5463	433	5525	2	2	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.1713	92.6560	99.9638	35.0529	5463	433	5525	2	2	100.0000
jmaeng-gatk	SNP	tv	HG002complexvar	*	99.5035	99.0473	99.9639	22.5835	243807	2345	243715	88	31	35.2273
ckim-vqsr	SNP	ti	map_l100_m2_e1	homalt	61.9730	44.9065	99.9639	77.0833	8305	10189	8305	3	3	100.0000
hfeng-pmm3	SNP	*	*	het	99.9317	99.8994	99.9639	18.5779	1871702	1885	1871578	675	30	4.4444
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.8071	93.8433	99.9643	38.7051	5533	363	5593	2	2	100.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.8071	93.8433	99.9643	38.7051	5533	363	5593	2	2	100.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.6662	99.3697	99.9644	66.5145	16868	107	16868	6	6	100.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.6662	99.3697	99.9644	66.5145	16868	107	16868	6	6	100.0000
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.1401	94.4708	99.9645	35.6743	5570	326	5631	2	2	100.0000
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.1401	94.4708	99.9645	35.6743	5570	326	5631	2	2	100.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7964	99.6289	99.9645	66.6982	16912	63	16912	6	5	83.3333
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7964	99.6289	99.9645	66.6982	16912	63	16912	6	5	83.3333
ckim-vqsr	SNP	*	map_l100_m1_e0	homalt	59.0007	41.8509	99.9646	77.1745	11301	15702	11301	4	3	75.0000
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.2655	94.7083	99.9646	39.5202	5584	312	5645	2	2	100.0000
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.2655	94.7083	99.9646	39.5202	5584	312	5645	2	2	100.0000
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8555	99.7467	99.9646	71.3411	16932	43	16932	6	3	50.0000
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8555	99.7467	99.9646	71.3411	16932	43	16932	6	3	50.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge