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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
72151-72200 / 86044 show all
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9614
99.9743
99.9486
59.3220
38861388622
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6156
99.2848
99.9486
75.9210
388728388722
100.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7825
99.6169
99.9487
75.9091
390015390022
100.0000
hfeng-pmm1SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.1217
98.3082
99.9487
53.8083
175493021754890
0.0000
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7569
99.5658
99.9487
80.8702
389817389820
0.0000
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5146
99.0842
99.9487
54.1691
389536389520
0.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8206
99.6928
99.9487
29.2204
389412389321
50.0000
egarrison-hhgaSNPtvHG002complexvar*
99.7884
99.6287
99.9487
21.8626
24523891424526712678
61.9048
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6927
99.4381
99.9487
76.0337
389322389322
100.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7697
99.5913
99.9487
76.0057
389916389922
100.0000
ckim-isaacSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
98.0159
96.1564
99.9488
52.1398
5854234585733
100.0000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.8082
99.6679
99.9488
76.8939
390213390221
50.0000
astatham-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3009
98.6611
99.9489
57.4118
176122391761192
22.2222
hfeng-pmm2INDELI16_PLUSHG002compoundhethetalt
96.0539
92.4510
99.9489
46.1750
1935158195511
100.0000
hfeng-pmm3INDELI16_PLUSHG002compoundhethetalt
96.1827
92.6899
99.9490
46.0226
1940153196011
100.0000
astatham-gatkINDELI16_PLUSHG002compoundhethetalt
96.1827
92.6899
99.9491
45.9080
1940153196211
100.0000
hfeng-pmm1INDELI16_PLUSHG002compoundhethetalt
96.2598
92.8333
99.9491
45.9846
1943150196311
100.0000
ltrigg-rtg1SNPtvmap_l150_m1_e0homalt
99.8478
99.7466
99.9492
70.2200
393610393722
100.0000
dgrover-gatkINDELI16_PLUSHG002compoundhethetalt
96.3626
93.0244
99.9492
46.0126
1947146196911
100.0000
ltrigg-rtg2SNPtvmap_l150_m1_e0homalt
99.7842
99.6199
99.9492
67.6001
393115393221
50.0000
jli-customINDELI16_PLUSHG002compoundhethetalt
96.5418
93.3588
99.9494
44.0544
1954139197511
100.0000
ckim-isaacSNP***
98.5357
97.1616
99.9494
15.9907
29679308670429685841504880
58.5106
ckim-vqsrSNPtimap_l150_m2_e0homalt
41.2133
25.9585
99.9494
90.5585
19775639197711
100.0000
ckim-gatkSNP*map_l150_m0_e0homalt
65.2389
48.4226
99.9495
85.6968
19802109198011
100.0000
ckim-isaacSNP*map_l100_m0_e0homalt
67.7175
51.2048
99.9496
53.7128
59505670595033
100.0000
dgrover-gatkSNPtimap_sirenhomalt
99.8204
99.6914
99.9498
49.0891
37799117377931917
89.4737
ckim-dragenSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9373
99.9248
99.9498
33.3890
39843398422
100.0000
jlack-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9373
99.9248
99.9498
33.7544
39843398421
50.0000
hfeng-pmm3INDEL**hetalt
96.7703
93.7869
99.9498
57.3944
236691568238941210
83.3333
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.9418
94.1095
99.9498
41.0630
157219841593887
87.5000
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.9418
94.1095
99.9498
41.0630
157219841593887
87.5000
ltrigg-rtg2SNPtimap_sirenhomalt
99.8455
99.7415
99.9498
49.3967
3781898378121918
94.7368
egarrison-hhgaSNP**het
99.8773
99.8048
99.9499
18.3927
186993036571869954938124
13.2196
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7126
99.4764
99.9499
47.9937
399021399020
0.0000
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6875
99.4266
99.9499
46.9556
398823398820
0.0000
dgrover-gatkSNPti**
99.9570
99.9639
99.9500
17.7617
208475975220846961042126
12.0921
dgrover-gatkINDELI6_15*hetalt
96.6039
93.4744
99.9502
38.7907
7993558803444
100.0000
ckim-vqsrSNPtimap_l150_m2_e1homalt
41.3935
26.1017
99.9502
90.5160
20085685200811
100.0000
cchapple-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8562
99.7624
99.9502
47.5635
201514820069107
70.0000
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7696
99.5895
99.9503
57.3476
2814411628146147
50.0000
ltrigg-rtg1SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8016
99.6534
99.9503
52.1900
201297020107103
30.0000
ckim-isaacSNPtimap_l125_m2_e0homalt
69.3312
53.0727
99.9503
64.5277
60285330602833
100.0000
jmaeng-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8563
99.7624
99.9504
49.5168
10078241007855
100.0000
bgallagher-sentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9009
99.8514
99.9504
61.6260
10082151008255
100.0000
bgallagher-sentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9232
99.8960
99.9505
56.3257
2017821201781010
100.0000
bgallagher-sentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9456
99.9406
99.9505
49.3379
1009661009655
100.0000
raldana-dualsentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9604
99.9703
99.9505
48.8948
1009931009955
100.0000
jmaeng-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7449
99.5401
99.9505
54.6217
606028606033
100.0000
jli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9406
99.9307
99.9505
49.4545
1009571009553
60.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.5939
99.2396
99.9506
44.1181
404631405021
50.0000