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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
72101-72150 / 86044 show all
ckim-gatkSNPtvmap_l125_m2_e1homalt
76.2777
61.6727
99.9466
77.3753
37462328374620
0.0000
jli-customSNPtisegduphomalt
99.9200
99.8934
99.9467
87.3710
74978749744
100.0000
bgallagher-sentieonSNPtisegduphomalt
99.9000
99.8534
99.9467
87.4231
749411749444
100.0000
jli-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.0633
94.3415
99.9468
62.9123
5602336564133
100.0000
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8937
99.8407
99.9468
55.7785
11278181127866
100.0000
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8260
99.7054
99.9469
65.8244
16925501692598
88.8889
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8260
99.7054
99.9469
65.8244
16925501692598
88.8889
jmaeng-gatkSNPtimap_l100_m1_e0homalt
84.6124
73.3575
99.9469
64.1277
1317547851317577
100.0000
ltrigg-rtg2SNPtimap_l125_m2_e0homalt
99.7442
99.5422
99.9470
65.7720
11306521130666
100.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.5088
99.0743
99.9471
55.8025
170181591701596
66.6667
hfeng-pmm2SNPtv**
99.9268
99.9066
99.9471
21.6564
96878490696870551342
8.1871
bgallagher-sentieonINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.4365
95.0488
99.9472
61.8862
5644294567933
100.0000
raldana-dualsentieonINDELI16_PLUS*hetalt
94.2306
89.1325
99.9472
55.4588
1870228189211
100.0000
ltrigg-rtg2SNP*HG002complexvar*
99.8684
99.7896
99.9473
18.8678
7527971587752943397167
42.0655
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.6279
93.5220
99.9473
22.3450
3768261379322
100.0000
bgallagher-sentieonSNP*map_sirenhomalt
99.8557
99.7643
99.9473
50.0857
55026130550172925
86.2069
ltrigg-rtg2SNPtimap_l125_m2_e1homalt
99.7464
99.5462
99.9474
65.8140
11406521140766
100.0000
ltrigg-rtg2SNPtiHG002complexvarhet
99.8501
99.7528
99.9475
16.9710
31398877831399216546
27.8788
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8251
99.7031
99.9475
55.2981
17126511712396
66.6667
eyeh-varpipeSNPtiHG002complexvarhomalt
99.9332
99.9188
99.9475
17.3280
1933071571807989569
72.6316
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.8132
93.8694
99.9475
22.1609
3782247380922
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.7868
93.8198
99.9475
22.1700
3780249380722
100.0000
jlack-gatkINDELI6_15HG002compoundhethetalt
94.0390
88.7900
99.9475
29.7817
7580957762144
100.0000
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.7231
93.7001
99.9475
34.6971
131488841333776
85.7143
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.9125
94.0563
99.9476
30.4494
7580479762543
75.0000
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.9125
94.0563
99.9476
30.4494
7580479762543
75.0000
gduggal-bwaplatSNPtimap_l125_m2_e0homalt
67.0606
50.4578
99.9476
79.7932
57315627572433
100.0000
jli-customSNPtvmap_sirenhomalt
99.8403
99.7332
99.9477
52.3546
17194461719199
100.0000
dgrover-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.9387
96.0088
99.9477
63.4628
5701237573733
100.0000
astatham-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.8685
95.8740
99.9477
63.1785
5693245572933
100.0000
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.0766
94.3658
99.9478
25.1564
3802227382722
100.0000
ckim-vqsrSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.3400
98.7394
99.9479
59.7020
383849383822
100.0000
eyeh-varpipeSNP*HG002complexvarhomalt
99.9303
99.9127
99.9480
18.2871
288323252263218137103
75.1825
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.2749
98.6108
99.9480
59.6368
383354384322
100.0000
astatham-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.4954
95.1601
99.9482
25.7593
3834195386022
100.0000
ckim-isaacSNPtiHG002complexvarhet
96.4266
93.1447
99.9482
15.3403
2931882157829334315218
11.8421
ckim-isaacSNPtimap_l125_m1_e0homalt
68.7652
52.4129
99.9482
60.3233
57895256578933
100.0000
ckim-dragenINDELI16_PLUSHG002compoundhethetalt
95.4049
91.2566
99.9482
45.8824
1910183193111
100.0000
ckim-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.6646
99.3826
99.9483
59.5457
386324386322
100.0000
hfeng-pmm2INDELD6_15*hetalt
96.9508
94.1277
99.9483
34.1160
7694480774043
75.0000
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.6126
95.3835
99.9483
25.9281
3843186386922
100.0000
gduggal-bwaplatSNPtimap_l125_m2_e1homalt
67.2881
50.7157
99.9483
79.7369
58115647580433
100.0000
ckim-isaacSNP*segdup*
98.2480
96.6046
99.9484
87.4705
2711495327116147
50.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3897
38843388422
100.0000
ckim-gatkSNP*map_l100_m1_e0homalt
83.6574
71.9327
99.9485
66.2938
19424757919424107
70.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3344
38843388422
100.0000
astatham-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8713
99.7942
99.9485
59.3783
38798387922
100.0000
jmaeng-gatkINDELI16_PLUSHG002compoundhethetalt
95.6914
91.7821
99.9485
44.7982
1921172194111
100.0000
jlack-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3004
38843388422
100.0000
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.8720
95.8799
99.9486
22.7273
3863166389122
100.0000