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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
72051-72100 / 86044 show all
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.6300
99.3177
99.9443
71.5425
538637538633
100.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.6300
99.3177
99.9443
71.5425
538637538633
100.0000
jmaeng-gatkSNP*map_l125_m0_e0homalt
69.6311
53.4267
99.9443
78.9757
35863126358622
100.0000
astatham-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.4474
98.9552
99.9444
60.4265
107971141079464
66.6667
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7876
99.6312
99.9445
71.5069
540320540333
100.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7876
99.6312
99.9445
71.5069
540320540333
100.0000
ckim-vqsrSNPtiHG002compoundhethomalt
98.6436
97.3763
99.9445
31.0556
7200194720044
100.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8246
99.7050
99.9445
72.0298
540716540732
66.6667
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8246
99.7050
99.9445
72.0298
540716540732
66.6667
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.5556
99.1696
99.9446
40.0259
1803215118029102
20.0000
ltrigg-rtg2SNPtvmap_l100_m1_e0homalt
99.8284
99.7125
99.9446
58.6136
901726901653
60.0000
ckim-vqsrSNP*map_l125_m2_e1homalt
47.2295
30.9206
99.9447
86.7543
542112111542132
66.6667
ckim-vqsrSNPtimap_l125_m2_e0homalt
48.2602
31.8102
99.9447
86.1579
36137745361322
100.0000
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8164
99.6885
99.9447
54.6733
2528079252811410
71.4286
astatham-gatkSNP*func_cds*
99.8621
99.7796
99.9448
24.2600
181104018107100
0.0000
ckim-gatkSNP*map_l100_m2_e0homalt
83.9525
72.3722
99.9448
68.4557
19919760419919117
63.6364
ckim-vqsrSNPtimap_l150_m1_e0homalt
39.6323
24.7168
99.9448
90.0193
18115516181111
100.0000
asubramanian-gatkSNPtisegduphomalt
98.2382
96.5889
99.9449
87.7431
7249256724944
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.9175
99.8900
99.9450
60.3037
10899121089565
83.3333
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7438
99.5435
99.9450
57.4906
16354751635292
22.2222
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6854
99.4272
99.9450
44.5461
364521363322
100.0000
gduggal-bwaplatSNPtimap_l125_m1_e0homalt
66.2065
49.4975
99.9451
78.1716
54675578546033
100.0000
ltrigg-rtg2SNPtimap_l125_m1_e0homalt
99.7369
99.5292
99.9454
62.9489
10993521099366
100.0000
astatham-gatkSNP*map_sirenhomalt
99.7411
99.5377
99.9454
50.1425
54901255548923026
86.6667
jli-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9133
99.8812
99.9455
56.3725
201752420175117
63.6364
dgrover-gatkSNP*map_sirenhomalt
99.8121
99.6791
99.9455
50.4067
54979177549703026
86.6667
ckim-vqsrSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.6562
99.3685
99.9455
58.6114
11014701101064
66.6667
ckim-vqsrSNPtimap_l125_m2_e1homalt
48.4929
32.0126
99.9455
86.0864
36687790366822
100.0000
ckim-gatkSNP*map_l100_m2_e1homalt
84.0675
72.5428
99.9455
68.3772
20164763220164117
63.6364
ckim-dragenSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8935
99.8416
99.9455
56.0535
2016732201781111
100.0000
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7626
99.5802
99.9456
54.3815
14708621470984
50.0000
ltrigg-rtg2SNPtvmap_l100_m2_e0homalt
99.8261
99.7070
99.9456
61.2864
918727918653
60.0000
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7252
99.5058
99.9456
54.0983
14697731469884
50.0000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_triTR_11to50*
99.9252
99.9048
99.9456
33.1240
73487734343
75.0000
jmaeng-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0184
92.3880
99.9457
61.4714
5486452552233
100.0000
gduggal-bwafbSNPtiHG002complexvarhomalt
99.8904
99.8351
99.9457
18.2578
19314531919315910588
83.8095
rpoplin-dv42SNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.9097
99.8737
99.9458
56.0006
11070141106665
83.3333
hfeng-pmm1INDEL**hetalt
96.9096
94.0524
99.9458
58.8135
237361501239601312
92.3077
dgrover-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.9143
99.8827
99.9458
56.3849
11071131106764
66.6667
ckim-vqsrINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.1910
92.7080
99.9459
61.2682
5505433554333
100.0000
ckim-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.2182
92.7585
99.9459
61.2554
5508430554633
100.0000
astatham-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
99.5825
99.2217
99.9459
39.6327
739458739141
25.0000
ckim-gatkSNPtvmap_l125_m2_e0homalt
76.1523
61.5091
99.9460
77.4235
37012316370120
0.0000
ltrigg-rtg2SNPtvmap_l100_m2_e1homalt
99.8278
99.7097
99.9461
61.3020
927527927453
60.0000
jmaeng-gatkSNPtisegduphomalt
99.4577
98.9740
99.9462
87.6674
742877742844
100.0000
gduggal-bwaplatSNPtimap_l100_m0_e0homalt
64.8122
47.9547
99.9463
76.1862
37284046372222
100.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
97.8461
95.8323
99.9464
57.4072
3725162372722
100.0000
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.7385
93.7300
99.9465
31.9578
129018631308576
85.7143
jlack-gatkSNPtisegduphomalt
99.8800
99.8135
99.9466
87.6556
749114749144
100.0000
astatham-gatkSNPtisegduphomalt
99.8666
99.7868
99.9466
87.4281
748916748944
100.0000