PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1436 1437 1438 1439 1440 1441 1442 1443 1444 ... 1720 1721 » 71951-72000 / 86044 show all
gduggal-bwaplat	SNP	*	map_l150_m2_e0	homalt	59.7639	42.6276	99.9398	85.5833	4987	6712	4983	3	3	100.0000
egarrison-hhga	SNP	*	HG002complexvar	homalt	99.8875	99.8351	99.9400	19.8887	288098	476	288126	173	140	80.9249
ckim-gatk	SNP	*	map_l150_m2_e0	homalt	72.5580	56.9536	99.9400	81.6478	6663	5036	6663	4	2	50.0000
gduggal-snapvard	SNP	tv	func_cds	homalt	99.2613	98.5915	99.9402	26.1484	1680	24	1671	1	1	100.0000
ckim-isaac	SNP	tv	map_l150_m1_e0	homalt	59.4623	42.3213	99.9402	68.6492	1670	2276	1670	1	1	100.0000
ckim-vqsr	SNP	*	map_l125_m1_e0	homalt	45.7370	29.6539	99.9402	85.9137	5013	11892	5013	3	2	66.6667
gduggal-bwavard	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	97.7441	95.6423	99.9404	50.0892	1690	77	1677	1	1	100.0000
jli-custom	SNP	ti	map_l100_m2_e1	homalt	99.7997	99.6593	99.9404	59.0260	18431	63	18431	11	11	100.0000
hfeng-pmm3	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.5561	93.3936	99.9404	41.2198	1654	117	1676	1	1	100.0000
hfeng-pmm1	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.5561	93.3936	99.9404	41.4660	1654	117	1676	1	1	100.0000
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7031	99.4668	99.9405	63.6364	1679	9	1679	1	1	100.0000
jlack-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8910	99.8415	99.9405	60.8743	10081	16	10081	6	6	100.0000
jli-custom	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8860	99.8316	99.9405	61.6312	10080	17	10080	6	4	66.6667
rpoplin-dv42	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8762	99.8119	99.9405	50.3909	10083	19	10083	6	5	83.3333
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7923	99.6445	99.9406	65.1625	1682	6	1682	1	1	100.0000
ltrigg-rtg2	SNP	*	map_l100_m1_e0	homalt	99.8127	99.6852	99.9406	57.7080	26918	85	26916	16	14	87.5000
ltrigg-rtg2	SNP	*	map_l125_m1_e0	homalt	99.7511	99.5623	99.9406	63.1402	16831	74	16832	10	9	90.0000
jli-custom	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8814	99.8223	99.9407	64.3853	1685	3	1685	1	0	0.0000
cchapple-custom	SNP	ti	map_l250_m2_e0	homalt	98.1670	96.4551	99.9407	84.8332	1687	62	1686	1	1	100.0000
ckim-dragen	INDEL	I1_5	HG002complexvar	hetalt	97.1421	94.4959	99.9407	69.6380	1631	95	1685	1	1	100.0000
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.9111	99.8815	99.9407	63.6892	1686	2	1686	1	1	100.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8006	99.6609	99.9407	54.5675	25273	86	25275	15	11	73.3333
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9333	99.9259	99.9407	34.6955	6740	5	6740	4	3	75.0000
jmaeng-gatk	SNP	ti	map_l100_m2_e0	homalt	84.8820	73.7670	99.9408	66.4315	13506	4803	13506	8	7	87.5000
gduggal-bwaplat	SNP	*	map_l150_m2_e1	homalt	59.9917	42.8596	99.9408	85.5254	5069	6758	5065	3	3	100.0000
ckim-gatk	SNP	*	map_l150_m2_e1	homalt	72.6891	57.1151	99.9408	81.5997	6755	5072	6755	4	2	50.0000
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5299	99.1222	99.9409	66.9776	16826	149	16910	10	6	60.0000
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5299	99.1222	99.9409	66.9776	16826	149	16910	10	6	60.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.0071	94.2405	99.9409	41.4127	1669	102	1691	1	1	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9312	99.9214	99.9410	54.0442	10170	8	10170	6	6	100.0000
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8615	99.7820	99.9410	72.3104	16938	37	16938	10	6	60.0000
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8615	99.7820	99.9410	72.3104	16938	37	16938	10	6	60.0000
ltrigg-rtg1	SNP	tv	HG002complexvar	*	99.8396	99.7384	99.9410	21.7226	245511	644	245768	145	59	40.6897
egarrison-hhga	SNP	tv	HG002complexvar	homalt	99.8748	99.8086	99.9410	22.7459	94929	182	94938	56	46	82.1429
gduggal-bwafb	SNP	tv	HG002complexvar	homalt	99.8685	99.7960	99.9410	22.9952	94917	194	94931	56	49	87.5000
ckim-vqsr	SNP	ti	map_l125_m1_e0	homalt	46.9945	30.7198	99.9411	85.1863	3393	7652	3393	2	2	100.0000
ckim-isaac	SNP	*	map_l125_m1_e0	homalt	66.8137	50.1804	99.9411	61.4585	8483	8422	8483	5	5	100.0000
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5470	99.1558	99.9413	57.3410	17032	145	17028	10	8	80.0000
astatham-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.3879	98.8406	99.9413	37.5183	3410	40	3407	2	1	50.0000
gduggal-bwavard	INDEL	I1_5	HG002complexvar	homalt	96.0632	92.4747	99.9414	32.6716	12436	1012	11931	7	5	71.4286
cchapple-custom	SNP	ti	map_l250_m2_e1	homalt	98.1620	96.4447	99.9415	84.8962	1709	63	1708	1	1	100.0000
jmaeng-gatk	SNP	ti	map_l100_m2_e1	homalt	84.9915	73.9321	99.9415	66.3568	13673	4821	13673	8	7	87.5000
hfeng-pmm2	INDEL	*	*	hetalt	96.9055	94.0484	99.9416	58.8044	23735	1502	23954	14	12	85.7143
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8164	99.6914	99.9417	52.6220	17124	53	17138	10	7	70.0000
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.9214	99.9010	99.9417	55.7201	17160	17	17156	10	8	80.0000
ndellapenna-hhga	SNP	ti	map_siren	homalt	99.8244	99.7072	99.9418	51.3860	37805	111	37806	22	20	90.9091
ckim-gatk	INDEL	I1_5	*	hetalt	95.6301	91.6749	99.9419	60.1212	10263	932	10325	6	5	83.3333
egarrison-hhga	SNP	tv	map_siren	homalt	99.8636	99.7854	99.9419	55.8765	17203	37	17203	10	9	90.0000
raldana-dualsentieon	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8406	99.7395	99.9420	62.2220	3446	9	3446	2	2	100.0000
ckim-vqsr	SNP	tv	map_l125_m2_e0	homalt	44.5965	28.7020	99.9421	88.0225	1727	4290	1727	1	0	0.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge