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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1435 1436 1437 1438 1439 1440 1441 1442 1443 ... 1720 1721 » 71901-71950 / 86044 show all
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6201	99.3057	99.9365	31.9250	4720	33	4718	3	3	100.0000
ckim-gatk	SNP	*	map_l150_m1_e0	homalt	71.6189	55.8059	99.9365	80.2510	6291	4982	6291	4	2	50.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7464	99.5570	99.9365	52.5475	1573	7	1573	1	0	0.0000
jli-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8148	99.6933	99.9367	55.5774	11050	34	11048	7	4	57.1429
hfeng-pmm3	SNP	ti	map_siren	homalt	99.9129	99.8892	99.9367	51.9265	37874	42	37868	24	14	58.3333
ckim-gatk	SNP	*	map_l125_m2_e1	homalt	77.2853	63.0048	99.9367	76.2699	11046	6486	11046	7	4	57.1429
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.9684	100.0000	99.9367	49.1803	1580	0	1580	1	0	0.0000
jli-custom	SNP	*	map_l100_m1_e0	homalt	99.7923	99.6482	99.9369	57.0814	26908	95	26908	17	16	94.1176
ckim-isaac	SNP	*	map_l125_m0_e0	homalt	64.1166	47.1990	99.9369	61.5104	3168	3544	3168	2	2	100.0000
hfeng-pmm2	SNP	*	*	het	99.9111	99.8854	99.9369	19.2150	1871439	2148	1871315	1181	42	3.5563
gduggal-snapvard	SNP	ti	*	homalt	99.4493	98.9663	99.9370	16.0694	794738	8301	790421	498	326	65.4618
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.6885	99.4406	99.9375	43.4875	1600	9	1600	1	1	100.0000
astatham-gatk	INDEL	I6_15	*	hetalt	96.4480	93.1938	99.9376	38.5683	7969	582	8010	5	5	100.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8445	99.7514	99.9377	43.3110	1605	4	1605	1	1	100.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8445	99.7514	99.9377	43.6886	1605	4	1605	1	1	100.0000
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8445	99.7514	99.9377	43.4109	1605	4	1605	1	1	100.0000
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8756	99.8135	99.9378	53.0803	1606	3	1606	1	0	0.0000
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8756	99.8135	99.9378	52.0442	1606	3	1606	1	0	0.0000
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.9067	99.8757	99.9378	47.2268	1607	2	1607	1	1	100.0000
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.7826	99.6279	99.9378	69.6768	4819	18	4819	3	3	100.0000
ckim-dragen	SNP	*	HG002complexvar	*	99.9301	99.9223	99.9379	19.4552	753795	586	754278	469	236	50.3198
gduggal-bwavard	SNP	*	HG002complexvar	homalt	98.4291	96.9651	99.9379	18.6318	279817	8758	270523	168	110	65.4762
ndellapenna-hhga	SNP	ti	map_l125_m2_e0	homalt	99.7486	99.5598	99.9381	67.6520	11308	50	11308	7	7	100.0000
ckim-gatk	SNP	ti	map_l100_m0_e0	homalt	76.7317	62.2717	99.9381	70.4634	4841	2933	4841	3	2	66.6667
jli-custom	SNP	*	map_l100_m2_e0	homalt	99.7944	99.6512	99.9381	59.7123	27427	96	27427	17	16	94.1176
ndellapenna-hhga	SNP	*	map_siren	homalt	99.8258	99.7135	99.9382	52.6378	54998	158	54999	34	30	88.2353
raldana-dualsentieon	INDEL	I1_5	HG002complexvar	hetalt	94.9524	90.4403	99.9382	69.6987	1561	165	1618	1	1	100.0000
ckim-vqsr	SNP	tv	map_l125_m1_e0	homalt	43.3097	27.6451	99.9383	87.2272	1620	4240	1620	1	0	0.0000
raldana-dualsentieon	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	94.8996	90.3444	99.9384	37.7684	1600	171	1622	1	1	100.0000
jli-custom	SNP	ti	map_l100_m1_e0	homalt	99.7965	99.6548	99.9386	56.4067	17898	62	17898	11	11	100.0000
ltrigg-rtg2	SNP	ti	map_l100_m1_e0	homalt	99.8049	99.6715	99.9386	57.1476	17901	59	17900	11	11	100.0000
jli-custom	SNP	*	map_l100_m2_e1	homalt	99.7946	99.6510	99.9387	59.6958	27699	97	27699	17	16	94.1176
ndellapenna-hhga	SNP	ti	HG002complexvar	*	99.8069	99.6755	99.9387	17.4775	506786	1650	506808	311	223	71.7042
ndellapenna-hhga	SNP	ti	map_l125_m2_e1	homalt	99.7508	99.5636	99.9387	67.6903	11408	50	11408	7	7	100.0000
raldana-dualsentieon	SNP	*	*	*	99.9260	99.9131	99.9389	18.4181	3051965	2654	3051826	1867	97	5.1955
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7762	99.6141	99.9389	56.2917	14713	57	14715	9	1	11.1111
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5044	99.0738	99.9389	63.8841	11445	107	11445	7	7	100.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5044	99.0738	99.9389	63.8841	11445	107	11445	7	7	100.0000
ckim-dragen	SNP	ti	HG002complexvar	*	99.9317	99.9245	99.9389	17.8695	508052	384	508287	311	156	50.1608
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8950	99.8510	99.9390	54.8240	14748	22	14750	9	4	44.4444
hfeng-pmm1	SNP	*	HG002compoundhet	het	96.0618	92.4743	99.9390	43.1383	13111	1067	13110	8	4	50.0000
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8713	99.8037	99.9390	54.3200	14741	29	14742	9	4	44.4444
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8747	99.8104	99.9390	55.0186	14742	28	14744	9	4	44.4444
ckim-gatk	SNP	ti	map_l100_m1_e0	homalt	84.4316	73.0902	99.9391	65.0795	13127	4833	13127	8	7	87.5000
gduggal-snapplat	SNP	ti	map_siren	homalt	97.6833	95.5270	99.9392	52.4384	36220	1696	36180	22	18	81.8182
egarrison-hhga	SNP	ti	HG002complexvar	homalt	99.8937	99.8480	99.9395	18.4037	193169	294	193188	117	94	80.3419
ndellapenna-hhga	SNP	tv	*	*	99.8629	99.7865	99.9395	20.8763	967620	2070	967646	586	175	29.8635
jlack-gatk	SNP	ti	HG002complexvar	*	99.9170	99.8944	99.9396	17.8349	507899	537	507834	307	122	39.7394
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	95.9181	92.2078	99.9396	36.0371	1633	138	1655	1	1	100.0000
jli-custom	SNP	ti	map_l100_m2_e0	homalt	99.8004	99.6614	99.9398	59.0453	18247	62	18247	11	11	100.0000

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