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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1434 1435 1436 1437 1438 1439 1440 1441 1442 ... 1720 1721 » 71851-71900 / 86044 show all
ltrigg-rtg2	SNP	tv	map_l125_m2_e1	homalt	99.7857	99.6378	99.9340	66.1624	6052	22	6058	4	3	75.0000
ltrigg-rtg1	SNP	tv	map_l125_m2_e1	homalt	99.8435	99.7530	99.9341	68.3791	6059	15	6065	4	4	100.0000
ckim-isaac	SNP	ti	map_l125_m2_e1	homalt	69.3119	53.0546	99.9342	64.5595	6079	5379	6079	4	4	100.0000
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8767	99.8193	99.9342	54.4187	6077	11	6077	4	4	100.0000
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9343	99.9343	99.9343	54.3868	6084	4	6084	4	4	100.0000
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9343	99.9343	99.9343	54.4380	6084	4	6084	4	4	100.0000
raldana-dualsentieon	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9507	99.9671	99.9343	54.3615	6086	2	6086	4	4	100.0000
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9425	99.9507	99.9343	54.5644	6085	3	6088	4	4	100.0000
ltrigg-rtg2	SNP	*	map_l100_m2_e0	homalt	99.8108	99.6875	99.9344	60.3899	27437	86	27435	18	16	88.8889
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6121	99.2918	99.9344	37.2432	10656	76	10656	7	1	14.2857
asubramanian-gatk	SNP	tv	map_l125_m2_e1	homalt	40.1526	25.1235	99.9345	89.0207	1526	4548	1526	1	0	0.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4788	99.0272	99.9346	76.0876	1527	15	1527	1	0	0.0000
jli-custom	SNP	tv	map_l100_m2_e0	homalt	99.7826	99.6310	99.9347	60.9754	9180	34	9180	6	5	83.3333
astatham-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4718	99.0131	99.9347	60.3688	55082	549	55072	36	19	52.7778
rpoplin-dv42	SNP	ti	func_cds	*	99.9420	99.9492	99.9347	23.0636	13780	7	13778	9	2	22.2222
egarrison-hhga	SNP	tv	map_l100_m2_e0	homalt	99.8316	99.7287	99.9347	64.6441	9189	25	9189	6	5	83.3333
raldana-dualsentieon	SNP	tv	map_l100_m2_e0	homalt	99.8479	99.7612	99.9348	60.9327	9192	22	9192	6	3	50.0000
rpoplin-dv42	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.9241	99.9133	99.9349	33.6595	4612	4	4607	3	2	66.6667
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7048	99.4757	99.9349	66.5658	16886	89	16886	11	11	100.0000
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7048	99.4757	99.9349	66.5658	16886	89	16886	11	11	100.0000
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6595	99.3855	99.9350	53.0212	6146	38	6146	4	0	0.0000
ndellapenna-hhga	SNP	*	HG002complexvar	*	99.7910	99.6474	99.9350	18.9550	751721	2660	751769	489	351	71.7791
ltrigg-rtg2	SNP	*	map_l100_m2_e1	homalt	99.8127	99.6906	99.9351	60.3846	27710	86	27708	18	16	88.8889
ckim-isaac	SNP	tv	HG002complexvar	het	95.8287	92.0463	99.9352	18.9218	138745	11989	138887	90	17	18.8889
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5445	99.1568	99.9353	61.6132	10819	92	10815	7	5	71.4286
jli-custom	SNP	tv	map_l100_m2_e1	homalt	99.7847	99.6345	99.9353	60.9647	9268	34	9268	6	5	83.3333
ltrigg-rtg2	SNP	ti	map_l100_m0_e0	homalt	99.7358	99.5369	99.9354	58.2970	7738	36	7738	5	5	100.0000
egarrison-hhga	SNP	tv	map_l100_m2_e1	homalt	99.8332	99.7312	99.9354	64.6456	9277	25	9277	6	5	83.3333
ndellapenna-hhga	SNP	ti	map_l100_m0_e0	homalt	99.6905	99.4469	99.9354	59.4017	7731	43	7731	5	5	100.0000
raldana-dualsentieon	SNP	tv	map_l100_m2_e1	homalt	99.8494	99.7635	99.9354	60.9109	9280	22	9280	6	3	50.0000
asubramanian-gatk	SNP	*	HG002complexvar	*	98.2310	96.5837	99.9354	19.5730	728609	25772	728466	471	54	11.4650
gduggal-snapplat	SNP	*	map_l125_m2_e0	homalt	94.2904	89.2489	99.9355	69.8671	15507	1868	15497	10	9	90.0000
gduggal-bwaplat	SNP	*	map_l150_m1_e0	homalt	58.4217	41.2756	99.9355	84.5500	4653	6620	4649	3	3	100.0000
rpoplin-dv42	INDEL	I6_15	HG002compoundhet	hetalt	95.0099	90.5470	99.9355	28.7042	7730	807	7742	5	5	100.0000
egarrison-hhga	SNP	ti	map_l100_m0_e0	homalt	99.8003	99.6656	99.9355	61.1047	7748	26	7748	5	5	100.0000
cchapple-custom	SNP	ti	map_l250_m1_e0	homalt	98.2278	96.5775	99.9356	83.5174	1552	55	1551	1	1	100.0000
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8395	99.7434	99.9357	57.3637	10883	28	10887	7	4	57.1429
ckim-dragen	SNP	tv	HG002complexvar	*	99.9267	99.9175	99.9359	22.5633	245949	203	246200	158	80	50.6329
ckim-gatk	SNP	*	map_l125_m2_e0	homalt	77.1330	62.8029	99.9359	76.3243	10912	6463	10912	7	4	57.1429
dgrover-gatk	SNP	tv	map_siren	homalt	99.7938	99.6520	99.9360	53.0780	17180	60	17177	11	9	81.8182
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	98.3834	96.8782	99.9360	67.6999	4686	151	4686	3	3	100.0000
gduggal-snapplat	SNP	*	map_l125_m2_e1	homalt	94.3221	89.3053	99.9361	69.8871	15657	1875	15646	10	9	90.0000
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7891	99.6426	99.9361	57.3259	28159	101	28161	18	11	61.1111
bgallagher-sentieon	SNP	tv	map_siren	homalt	99.8607	99.7854	99.9361	52.7521	17203	37	17200	11	9	81.8182
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8244	99.7128	99.9361	40.9541	6250	18	6259	4	3	75.0000
jli-custom	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8803	99.8245	99.9361	43.9129	6257	11	6257	4	3	75.0000
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.9282	99.9202	99.9362	44.6182	6263	5	6263	4	3	75.0000
hfeng-pmm1	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4409	98.9502	99.9364	58.3709	55047	584	55037	35	12	34.2857
ndellapenna-hhga	SNP	ti	map_l125_m1_e0	homalt	99.7415	99.5473	99.9364	64.8588	10995	50	10995	7	7	100.0000
ltrigg-rtg1	SNP	*	map_siren	homalt	99.8648	99.7933	99.9364	52.2080	55042	114	55031	35	31	88.5714

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