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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1431 1432 1433 1434 1435 1436 1437 1438 1439 ... 1720 1721 » 71701-71750 / 86044 show all
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9452	99.9635	99.9270	33.2602	2737	1	2737	2	1	50.0000
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7083	99.4905	99.9270	74.1698	1367	7	1368	1	0	0.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7814	99.6361	99.9271	72.2301	1369	5	1370	1	0	0.0000
ckim-isaac	SNP	*	map_l150_m2_e0	homalt	63.7998	46.8587	99.9271	70.9027	5482	6217	5482	4	4	100.0000
egarrison-hhga	SNP	tv	map_l150_m2_e1	homalt	99.7698	99.6130	99.9272	73.5901	4118	16	4118	3	3	100.0000
bgallagher-sentieon	SNP	ti	*	*	99.9476	99.9680	99.9272	17.4519	2084844	667	2084781	1519	117	7.7024
ckim-isaac	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	98.0365	96.2158	99.9273	21.3265	1373	54	1375	1	0	0.0000
dgrover-gatk	SNP	ti	map_l100_m1_e0	homalt	99.7294	99.5323	99.9273	57.4153	17876	84	17876	13	11	84.6154
jli-custom	SNP	ti	map_l125_m1_e0	homalt	99.7551	99.5835	99.9273	62.3216	10999	46	10999	8	8	100.0000
jli-custom	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8912	99.8550	99.9274	36.4538	2754	4	2754	2	2	100.0000
ckim-gatk	SNP	ti	map_l150_m1_e0	homalt	72.0545	56.3396	99.9274	79.8232	4128	3199	4128	3	2	66.6667
ndellapenna-hhga	SNP	ti	map_l100_m1_e0	homalt	99.7965	99.6659	99.9274	59.1233	17900	60	17900	13	13	100.0000
egarrison-hhga	SNP	ti	map_l125_m1_e0	homalt	99.8187	99.7103	99.9274	66.0474	11013	32	11013	8	8	100.0000
hfeng-pmm3	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4564	98.9898	99.9274	58.6346	55069	562	55060	40	15	37.5000
hfeng-pmm3	SNP	*	map_siren	homalt	99.9057	99.8840	99.9274	53.2388	55092	64	55083	40	22	55.0000
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9275	99.9275	99.9275	36.0093	2756	2	2756	2	2	100.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9275	99.9275	99.9275	37.0751	2756	2	2756	2	2	100.0000
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9456	99.9637	99.9275	37.1096	2757	1	2757	2	2	100.0000
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9638	100.0000	99.9275	37.9915	2758	0	2758	2	2	100.0000
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9275	99.9275	99.9275	36.3783	2756	2	2756	2	2	100.0000
egarrison-hhga	SNP	ti	func_cds	*	99.9456	99.9637	99.9275	22.3817	13782	5	13782	10	0	0.0000
bgallagher-sentieon	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9275	99.9275	99.9275	36.2312	2756	2	2756	2	2	100.0000
raldana-dualsentieon	SNP	ti	map_l100_m1_e0	homalt	99.8161	99.7049	99.9275	56.2318	17907	53	17907	13	12	92.3077
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	96.9804	94.2019	99.9277	38.3793	1381	85	1383	1	1	100.0000
qzeng-custom	SNP	*	func_cds	homalt	99.8779	99.8281	99.9278	20.5349	6967	12	6918	5	3	60.0000
ckim-gatk	SNP	ti	map_l125_m1_e0	homalt	77.0788	62.7343	99.9279	73.7914	6929	4116	6929	5	4	80.0000
gduggal-snapplat	SNP	ti	map_l100_m1_e0	homalt	96.1786	92.7004	99.9279	60.1160	16649	1311	16632	12	12	100.0000
ckim-isaac	SNP	ti	map_l100_m0_e0	homalt	69.6665	53.4731	99.9279	52.0793	4157	3617	4157	3	3	100.0000
dgrover-gatk	SNP	*	*	*	99.9456	99.9631	99.9282	19.2565	3053492	1127	3053343	2195	207	9.4305
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.0051	98.0989	99.9282	41.2255	5573	108	5569	4	4	100.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6571	99.3874	99.9283	62.5798	6976	43	6972	5	3	60.0000
rpoplin-dv42	SNP	*	func_cds	*	99.9366	99.9449	99.9284	24.7263	18140	10	18137	13	3	23.0769
gduggal-snapfb	SNP	*	func_cds	homalt	99.9570	99.9857	99.9284	24.3691	6978	1	6978	5	1	20.0000
ckim-isaac	SNP	tv	map_l125_m2_e0	homalt	63.4373	46.4683	99.9285	67.7501	2796	3221	2796	2	2	100.0000
ndellapenna-hhga	SNP	tv	*	het	99.8309	99.7335	99.9285	20.7977	590119	1577	590138	422	45	10.6635
ltrigg-rtg1	SNP	ti	map_siren	homalt	99.8522	99.7758	99.9287	51.0640	37831	85	37826	27	26	96.2963
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5328	99.1399	99.9287	67.1581	16829	146	16829	12	12	100.0000
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5328	99.1399	99.9287	67.1581	16829	146	16829	12	12	100.0000
dgrover-gatk	SNP	ti	map_l100_m2_e0	homalt	99.7264	99.5248	99.9287	59.9046	18222	87	18222	13	11	84.6154
mlin-fermikit	SNP	ti	func_cds	het	99.4565	98.9887	99.9288	17.2332	8418	86	8418	6	0	0.0000
raldana-dualsentieon	SNP	ti	map_l100_m2_e0	homalt	99.8196	99.7105	99.9288	58.8267	18256	53	18256	13	12	92.3077
ltrigg-rtg2	SNP	*	map_l150_m1_e0	homalt	99.7245	99.5210	99.9288	67.8086	11219	54	11221	8	7	87.5000
ltrigg-rtg2	SNP	ti	map_l100_m2_e0	homalt	99.8031	99.6778	99.9288	59.8461	18250	59	18249	13	13	100.0000
egarrison-hhga	SNP	ti	map_l100_m2_e0	homalt	99.8579	99.7870	99.9289	62.7872	18270	39	18270	13	13	100.0000
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8303	99.7319	99.9289	55.1102	25291	68	25294	18	12	66.6667
asubramanian-gatk	SNP	tv	map_l125_m1_e0	homalt	38.6733	23.9761	99.9289	88.4461	1405	4455	1405	1	0	0.0000
asubramanian-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.3658	98.8087	99.9291	27.0801	1410	17	1410	1	1	100.0000
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.6524	97.4079	99.9291	42.5020	1428	38	1410	1	0	0.0000
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.3658	98.8087	99.9291	26.8533	1410	17	1410	1	1	100.0000
hfeng-pmm1	SNP	ti	HG002compoundhet	*	98.2873	96.6987	99.9291	34.1329	16901	577	16902	12	8	66.6667

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