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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1429 1430 1431 1432 1433 1434 1435 1436 1437 ... 1720 1721 » 71601-71650 / 86044 show all
egarrison-hhga	SNP	*	func_cds	*	99.9477	99.9725	99.9229	23.9159	18145	5	18145	14	0	0.0000
egarrison-hhga	SNP	*	map_l125_m1_e0	homalt	99.8075	99.6924	99.9229	66.3441	16853	52	16853	13	13	100.0000
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7564	99.5904	99.9230	28.4060	3890	16	3891	3	0	0.0000
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7949	99.6672	99.9230	28.5321	3893	13	3892	3	1	33.3333
ltrigg-rtg1	SNP	tv	HG002complexvar	het	99.7971	99.6716	99.9230	21.1569	150239	495	150457	116	36	31.0345
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7185	99.5147	99.9231	80.8305	3896	19	3898	3	1	33.3333
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.8976	99.8720	99.9231	28.9976	3901	5	3900	3	2	66.6667
astatham-gatk	SNP	ti	map_l100_m2_e0	homalt	99.6302	99.3391	99.9231	59.5727	18188	121	18188	14	13	92.8571
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7826	99.6424	99.9232	75.5082	3901	14	3901	3	2	66.6667
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8472	99.7712	99.9233	30.6546	1308	3	1302	1	1	100.0000
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8472	99.7712	99.9233	31.1675	1308	3	1302	1	1	100.0000
ckim-isaac	SNP	*	map_l150_m1_e0	homalt	63.2096	46.2255	99.9233	66.9874	5211	6062	5211	4	4	100.0000
hfeng-pmm1	SNP	*	HG002compoundhet	*	97.8294	95.8214	99.9233	39.2517	24743	1079	24742	19	15	78.9474
bgallagher-sentieon	SNP	ti	map_l100_m2_e0	homalt	99.7949	99.6668	99.9233	59.4718	18248	61	18248	14	12	85.7143
gduggal-bwaplat	INDEL	D16_PLUS	HG002compoundhet	hetalt	80.5942	67.5311	99.9233	34.2251	1302	626	1302	1	1	100.0000
dgrover-gatk	SNP	*	map_l100_m2_e0	homalt	99.7105	99.4986	99.9234	60.6643	27385	138	27385	21	16	76.1905
hfeng-pmm3	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4756	99.0317	99.9234	63.0172	27410	268	27401	21	8	38.0952
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	98.7748	97.6522	99.9235	77.0526	1331	32	1307	1	0	0.0000
ckim-vqsr	SNP	*	segdup	homalt	98.5850	97.2820	99.9235	88.7282	10451	292	10451	8	8	100.0000
gduggal-snapplat	SNP	ti	map_l100_m2_e0	homalt	96.2308	92.8014	99.9235	62.6446	16991	1318	16974	13	13	100.0000
gduggal-snapplat	SNP	*	map_l100_m1_e0	homalt	95.8529	92.1009	99.9236	61.4019	24870	2133	24854	19	14	73.6842
ckim-dragen	SNP	*	map_siren	homalt	99.7220	99.5214	99.9236	48.9049	54892	264	54896	42	38	90.4762
gduggal-snapvard	SNP	tv	*	homalt	99.4119	98.9054	99.9237	19.2463	372995	4128	370593	283	154	54.4170
rpoplin-dv42	INDEL	I1_5	HG002compoundhet	hetalt	96.6553	93.5940	99.9237	57.4617	10461	716	10476	8	8	100.0000
egarrison-hhga	SNP	tv	map_l150_m1_e0	homalt	99.7589	99.5945	99.9237	71.1191	3930	16	3930	3	3	100.0000
ckim-isaac	SNP	tv	func_cds	het	99.3184	98.7204	99.9238	24.8927	2623	34	2623	2	0	0.0000
ckim-vqsr	SNP	*	HG002compoundhet	homalt	98.6617	97.4309	99.9239	35.4419	10505	277	10504	8	7	87.5000
gduggal-bwavard	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	98.5181	97.1512	99.9239	28.2478	2660	78	2627	2	1	50.0000
gduggal-bwaplat	SNP	*	segdup	homalt	98.8522	97.8032	99.9239	88.9336	10507	236	10502	8	8	100.0000
ltrigg-rtg1	SNP	tv	map_l100_m2_e0	homalt	99.8534	99.7829	99.9239	63.3991	9194	20	9193	7	4	57.1429
astatham-gatk	SNP	ti	map_l100_m2_e1	homalt	99.6312	99.3403	99.9239	59.5512	18372	122	18372	14	13	92.8571
bgallagher-sentieon	SNP	ti	map_l100_m2_e1	homalt	99.7943	99.6648	99.9241	59.4504	18432	62	18432	14	12	85.7143
dgrover-gatk	SNP	*	map_l100_m2_e1	homalt	99.7116	99.4999	99.9241	60.6444	27657	139	27657	21	16	76.1905
egarrison-hhga	SNP	tv	map_l150_m0_e0	homalt	99.6224	99.3223	99.9242	75.6143	1319	9	1319	1	1	100.0000
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.2844	98.6527	99.9242	48.8561	1318	18	1318	1	0	0.0000
jli-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8485	99.7730	99.9242	55.1449	17138	39	17136	13	8	61.5385
ltrigg-rtg2	SNP	tv	map_l150_m0_e0	homalt	99.6224	99.3223	99.9242	72.7891	1319	9	1319	1	0	0.0000
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.2844	98.6527	99.9242	46.2291	1318	18	1318	1	0	0.0000
gduggal-snapplat	SNP	ti	map_l100_m2_e1	homalt	96.2554	92.8463	99.9243	62.6415	17171	1323	17154	13	13	100.0000
astatham-gatk	SNP	tv	map_siren	homalt	99.7239	99.5244	99.9243	52.7924	17158	82	17155	13	10	76.9231
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.9156	99.9069	99.9243	55.5895	17161	16	17157	13	8	61.5385
ckim-vqsr	INDEL	I6_15	*	hetalt	95.9384	92.2582	99.9244	35.7201	7889	662	7930	6	5	83.3333
ckim-gatk	INDEL	I6_15	*	hetalt	95.9700	92.3167	99.9244	35.7056	7894	657	7935	6	5	83.3333
gduggal-bwavard	SNP	tv	HG002complexvar	homalt	98.3914	96.9047	99.9244	20.9085	92167	2944	89912	68	35	51.4706
ltrigg-rtg1	SNP	tv	map_l150_m0_e0	homalt	99.6981	99.4729	99.9244	76.2016	1321	7	1321	1	1	100.0000
ltrigg-rtg1	SNP	tv	map_l100_m2_e1	homalt	99.8548	99.7850	99.9246	63.4100	9282	20	9281	7	4	57.1429
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9248	99.9248	99.9248	37.2719	3984	3	3984	3	3	100.0000
raldana-dualsentieon	INDEL	D1_5	HG002complexvar	hetalt	97.5400	95.2663	99.9249	72.3364	1288	64	1331	1	1	100.0000
egarrison-hhga	SNP	*	map_l125_m2_e0	homalt	99.8127	99.7007	99.9250	68.9614	17323	52	17323	13	13	100.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.1639	98.4142	99.9251	72.5328	5337	86	5337	4	4	100.0000

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