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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1428 1429 1430 1431 1432 1433 1434 1435 1436 ... 1720 1721 » 71551-71600 / 86044 show all
raldana-dualsentieon	SNP	ti	map_l125_m2_e0	homalt	99.7663	99.6126	99.9205	64.9616	11314	44	11314	9	8	88.8889
rpoplin-dv42	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8787	99.8366	99.9207	56.8327	20166	33	20166	16	7	43.7500
gduggal-bwavard	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.0131	98.1219	99.9207	56.5287	3814	73	3779	3	2	66.6667
jlack-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8960	99.8713	99.9208	48.6105	10089	13	10089	8	7	87.5000
hfeng-pmm2	SNP	ti	map_siren	homalt	99.9103	99.8998	99.9208	52.1071	37878	38	37872	30	20	66.6667
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5463	99.1745	99.9208	47.8198	2523	21	2523	2	0	0.0000
gduggal-snapvard	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	90.9582	83.4711	99.9208	44.6727	808	160	10092	8	8	100.0000
ckim-dragen	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8713	99.8218	99.9208	48.8376	10084	18	10093	8	8	100.0000
ndellapenna-hhga	SNP	ti	map_l150_m2_e0	homalt	99.6907	99.4617	99.9209	72.2145	7575	41	7575	6	6	100.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6057	99.2925	99.9209	50.5187	2526	18	2526	2	0	0.0000
ltrigg-rtg2	SNP	ti	map_l150_m2_e0	homalt	99.7039	99.4879	99.9209	70.3819	7577	39	7578	6	6	100.0000
jli-custom	SNP	ti	map_l150_m2_e0	homalt	99.7105	99.5011	99.9209	69.8737	7578	38	7578	6	6	100.0000
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8263	99.7319	99.9210	54.5963	25291	68	25293	20	15	75.0000
hfeng-pmm2	SNP	tv	*	het	99.8886	99.8560	99.9212	22.0414	590844	852	590770	466	18	3.8627
raldana-dualsentieon	SNP	ti	map_l125_m2_e1	homalt	99.7684	99.6160	99.9212	64.9891	11414	44	11414	9	8	88.8889
gduggal-snapplat	SNP	*	map_l100_m2_e0	homalt	95.9129	92.2138	99.9212	63.8760	25380	2143	25364	20	15	75.0000
gduggal-bwaplat	SNP	*	map_l125_m0_e0	homalt	54.9108	37.8576	99.9213	85.2772	2541	4171	2539	2	2	100.0000
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9411	99.9607	99.9214	54.0979	10174	4	10174	8	8	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9361	99.9509	99.9214	54.3780	10173	5	10173	8	8	100.0000
cchapple-custom	SNP	*	HG002complexvar	*	99.8003	99.6796	99.9214	18.6735	751964	2417	749599	590	426	72.2034
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9214	99.9214	99.9214	54.3038	10170	8	10169	8	8	100.0000
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9411	99.9607	99.9214	54.3285	10174	4	10174	8	8	100.0000
ckim-isaac	SNP	tv	segdup	het	98.0147	96.1793	99.9214	89.5689	5085	202	5087	4	1	25.0000
jmaeng-gatk	SNP	*	map_l250_m2_e1	homalt	63.8458	46.9095	99.9216	93.0622	1275	1443	1275	1	1	100.0000
astatham-gatk	SNP	ti	map_l100_m1_e0	homalt	99.6258	99.3318	99.9216	57.0466	17840	120	17840	14	13	92.8571
ltrigg-rtg2	SNP	ti	map_l150_m2_e1	homalt	99.7069	99.4930	99.9217	70.4375	7654	39	7656	6	6	100.0000
jli-custom	SNP	ti	map_l150_m2_e1	homalt	99.7134	99.5060	99.9217	69.9097	7655	38	7655	6	6	100.0000
ltrigg-rtg2	SNP	tv	map_l100_m0_e0	homalt	99.7656	99.6100	99.9217	59.8070	3831	15	3829	3	1	33.3333
ndellapenna-hhga	SNP	ti	map_l150_m2_e1	homalt	99.6938	99.4670	99.9217	72.2586	7652	41	7652	6	6	100.0000
bgallagher-sentieon	SNP	ti	map_l100_m1_e0	homalt	99.7937	99.6659	99.9218	56.9365	17900	60	17900	14	12	85.7143
dgrover-gatk	SNP	*	map_l100_m1_e0	homalt	99.7105	99.5001	99.9219	58.2002	26868	135	26868	21	16	76.1905
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7892	99.6568	99.9219	57.6377	28163	97	28165	22	14	63.6364
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7590	99.5966	99.9219	57.4394	28146	114	28148	22	15	68.1818
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5178	99.1170	99.9219	62.2385	11450	102	11509	9	8	88.8889
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5178	99.1170	99.9219	62.2385	11450	102	11509	9	8	88.8889
gduggal-snapplat	SNP	*	map_l100_m2_e1	homalt	95.9332	92.2507	99.9220	63.8706	25642	2154	25625	20	15	75.0000
ndellapenna-hhga	SNP	*	map_l100_m1_e0	homalt	99.7849	99.6482	99.9220	59.8338	26908	95	26908	21	19	90.4762
dgrover-gatk	SNP	ti	*	het	99.9394	99.9568	99.9221	18.8587	1281337	554	1281283	999	87	8.7087
asubramanian-gatk	SNP	*	HG002complexvar	het	98.3318	96.7914	99.9221	19.0611	450561	14936	450442	351	31	8.8319
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5600	99.2006	99.9221	57.7897	3847	31	3847	3	0	0.0000
egarrison-hhga	SNP	*	map_l100_m0_e0	homalt	99.7759	99.6299	99.9223	61.7548	11577	43	11577	9	8	88.8889
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.4469	98.9759	99.9224	33.5509	3866	40	3865	3	2	66.6667
gduggal-bwavard	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	84.9850	73.9327	99.9224	57.1120	2615	922	2576	2	2	100.0000
jli-custom	SNP	ti	map_l100_m0_e0	homalt	99.6776	99.4340	99.9224	57.9039	7730	44	7730	6	6	100.0000
ltrigg-rtg1	SNP	tv	map_l100_m1_e0	homalt	99.8561	99.7899	99.9225	60.9412	9024	19	9023	7	4	57.1429
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8581	99.7937	99.9225	58.9725	3870	8	3870	3	1	33.3333
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.5154	97.1471	99.9228	63.2207	1294	38	1294	1	0	0.0000
jli-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9228	99.9228	99.9228	59.2856	3884	3	3884	3	2	66.6667
raldana-dualsentieon	SNP	ti	*	het	99.9019	99.8809	99.9229	17.7757	1280364	1527	1280313	988	21	2.1255
ckim-vqsr	SNP	ti	*	het	99.5238	99.1280	99.9229	24.8520	1270713	11178	1270665	981	62	6.3201

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