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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1424 1425 1426 1427 1428 1429 1430 1431 1432 ... 1720 1721 » 71351-71400 / 86044 show all
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.5998	99.2908	99.9108	42.6598	1120	8	1120	1	1	100.0000
cchapple-custom	SNP	tv	HG002complexvar	*	99.7805	99.6506	99.9108	21.2813	245292	860	244113	218	153	70.1835
jli-custom	SNP	*	map_l150_m1_e0	homalt	99.6978	99.4855	99.9109	67.4251	11215	58	11215	10	10	100.0000
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.0392	94.3279	99.9110	42.3116	3326	200	3366	3	3	100.0000
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.0392	94.3279	99.9110	42.3116	3326	200	3366	3	3	100.0000
raldana-dualsentieon	SNP	*	map_l125_m1_e0	homalt	99.7690	99.6273	99.9110	62.5841	16842	63	16842	15	11	73.3333
egarrison-hhga	SNP	*	map_l150_m1_e0	homalt	99.7690	99.6274	99.9110	70.9129	11231	42	11231	10	10	100.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.6020	1124	4	1124	1	1	100.0000
dgrover-gatk	SNP	tv	map_l100_m1_e0	homalt	99.6730	99.4360	99.9111	59.6774	8992	51	8992	8	5	62.5000
ckim-dragen	SNP	ti	HG002complexvar	het	99.9189	99.9266	99.9111	17.5776	314535	231	314661	280	125	44.6429
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.5727	1124	4	1124	1	1	100.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.4847	1124	4	1124	1	1	100.0000
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8225	99.7340	99.9112	52.5895	1125	3	1125	1	0	0.0000
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8225	99.7340	99.9112	51.8392	1125	3	1125	1	0	0.0000
eyeh-varpipe	SNP	*	map_siren	homalt	99.8931	99.8749	99.9112	54.6593	55087	69	52905	47	25	53.1915
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8670	99.8227	99.9113	46.4608	1126	2	1126	1	1	100.0000
gduggal-snapplat	SNP	*	map_l150_m2_e0	homalt	92.8770	86.7681	99.9113	74.6788	10151	1548	10142	9	9	100.0000
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8670	99.8227	99.9113	54.5565	1126	2	1126	1	1	100.0000
raldana-dualsentieon	SNP	tv	HG002compoundhet	homalt	99.8228	99.7344	99.9113	42.6999	3379	9	3380	3	2	66.6667
ndellapenna-hhga	SNP	tv	map_l100_m1_e0	homalt	99.7619	99.6130	99.9113	61.1747	9008	35	9008	8	6	75.0000
dgrover-gatk	SNP	ti	map_l125_m2_e0	homalt	99.6336	99.3573	99.9115	66.1532	11285	73	11285	10	8	80.0000
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3358	98.7667	99.9115	42.6185	11292	141	11289	10	2	20.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9362	99.9607	99.9116	54.3220	10174	4	10174	9	9	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9214	99.9312	99.9116	54.3329	10171	7	10167	9	9	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9362	99.9607	99.9116	54.3466	10174	4	10174	9	9	100.0000
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.3835	94.9801	99.9116	43.2609	3349	177	3390	3	3	100.0000
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.3835	94.9801	99.9116	43.2609	3349	177	3390	3	3	100.0000
raldana-dualsentieon	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	91.8485	84.9895	99.9117	39.0086	3250	574	3393	3	3	100.0000
gduggal-bwavard	SNP	ti	map_siren	homalt	98.3235	96.7850	99.9118	51.1238	36697	1219	36241	32	28	87.5000
ndellapenna-hhga	SNP	*	func_cds	*	99.9367	99.9614	99.9119	23.5700	18143	7	18143	16	0	0.0000
gduggal-snapplat	SNP	ti	map_l125_m2_e0	homalt	94.6768	89.9630	99.9119	68.9436	10218	1140	10207	9	9	100.0000
hfeng-pmm1	SNP	*	func_cds	*	99.9366	99.9614	99.9119	23.2953	18143	7	18140	16	0	0.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.4759	99.0435	99.9122	35.0997	3417	33	3414	3	0	0.0000
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.4759	99.0435	99.9122	35.7223	3417	33	3414	3	0	0.0000
dgrover-gatk	SNP	ti	map_l125_m2_e1	homalt	99.6368	99.3629	99.9122	66.1709	11385	73	11385	10	8	80.0000
astatham-gatk	SNP	*	map_l100_m2_e0	homalt	99.6137	99.3169	99.9123	60.3292	27335	188	27335	24	19	79.1667
jli-custom	SNP	ti	*	het	99.9331	99.9539	99.9123	17.4772	1281300	591	1281266	1125	87	7.7333
gduggal-snapplat	SNP	*	map_l150_m2_e1	homalt	92.9111	86.8268	99.9123	74.6875	10269	1558	10259	9	9	100.0000
astatham-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4245	98.9414	99.9124	64.7733	27385	293	27376	24	14	58.3333
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.8248	99.7374	99.9124	46.8961	2279	6	2282	2	0	0.0000
jlack-gatk	SNP	tv	map_siren	homalt	99.5956	99.2807	99.9124	53.4780	17116	124	17113	15	10	66.6667
hfeng-pmm1	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4519	98.9956	99.9125	62.9106	27400	278	27391	24	10	41.6667
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.8468	99.7812	99.9125	47.3260	2280	5	2283	2	0	0.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.8468	99.7812	99.9125	46.5872	2280	5	2283	2	0	0.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6222	99.3336	99.9125	51.6616	25190	169	25113	22	14	63.6364
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5409	99.1719	99.9126	55.4663	25149	210	25156	22	13	59.0909
raldana-dualsentieon	SNP	tv	*	*	99.9049	99.8971	99.9127	21.2799	968692	998	968612	846	44	5.2010
gduggal-snapplat	SNP	ti	map_l125_m2_e1	homalt	94.7112	90.0244	99.9127	68.9685	10315	1143	10304	9	9	100.0000
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6954	99.4790	99.9128	62.0351	3437	18	3437	3	3	100.0000
dgrover-gatk	SNP	tv	map_l100_m2_e0	homalt	99.6791	99.4465	99.9128	62.0923	9163	51	9163	8	5	62.5000

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