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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
71201-71250 / 86044 show all
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9381
99.9734
99.9027
56.1708
112933112931111
100.0000
bgallagher-sentieonSNPtimap_l125_m2_e0homalt
99.7354
99.5686
99.9028
65.6605
113094911309119
81.8182
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.2126
92.7854
99.9028
33.4520
2032158205522
100.0000
jli-customSNPtvmap_l150_m2_e1homalt
99.6848
99.4678
99.9028
70.2106
411222411244
100.0000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.8463
99.7898
99.9029
55.0600
617113617161
16.6667
raldana-dualsentieonSNPtvmap_l150_m2_e1homalt
99.7335
99.5646
99.9029
70.1838
411618411642
50.0000
bgallagher-sentieonSNPtvmap_l100_m2_e1homalt
99.7847
99.6667
99.9030
61.6624
927131927196
66.6667
astatham-gatkSNPtimap_l125_m2_e1homalt
99.4917
99.0836
99.9032
65.8143
11353105113531110
90.9091
jli-customINDELD1_5HG002complexvarhet
99.7322
99.5618
99.9033
54.7904
206749120667206
30.0000
bgallagher-sentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.6530
93.6073
99.9036
32.9997
2050140207322
100.0000
raldana-dualsentieonSNP**het
99.8865
99.8694
99.9036
19.2179
187114124461871016180643
2.3810
bgallagher-sentieonSNPtimap_l125_m2_e1homalt
99.7377
99.5724
99.9037
65.6841
114094911409119
81.8182
gduggal-bwavardINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
89.6250
81.2640
99.9038
61.4872
177964103176601716
94.1176
gduggal-bwavardSNPtvmap_sirenhomalt
98.5863
97.3028
99.9041
54.3761
16775465166651612
75.0000
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.5582
99.2146
99.9041
50.2607
1465411614581146
42.8571
raldana-dualsentieonSNPtimap_l150_m1_e0homalt
99.6923
99.4814
99.9041
67.2252
728938728976
85.7143
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.8164
99.7288
99.9041
43.6419
625117625265
83.3333
qzeng-customSNP**homalt
99.6134
99.3243
99.9041
17.3884
1172188797411620901115707
63.4081
egarrison-hhgaSNPtimap_l150_m1_e0homalt
99.7745
99.6451
99.9042
70.8007
730126730177
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8087
99.7134
99.9043
58.1701
2817981281812715
55.5556
ckim-vqsrSNPtilowcmp_SimpleRepeat_diTR_11to50het
99.7614
99.6188
99.9044
71.9607
313612313633
100.0000
hfeng-pmm3INDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.8514
86.7287
99.9044
30.7514
2052314209022
100.0000
jlack-gatkSNPtimap_l100_m1_e0homalt
99.3843
98.8697
99.9044
57.5961
17757203177571715
88.2353
egarrison-hhgaSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.7071
99.5105
99.9045
32.0412
731936732172
28.5714
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.7194
99.5347
99.9047
51.7499
25241118251642415
62.5000
qzeng-customSNPti*homalt
99.6207
99.3383
99.9047
15.9860
7977255314792891756473
62.5661
qzeng-customSNPtifunc_cdshomalt
99.8860
99.8673
99.9047
18.9998
52687524353
60.0000
hfeng-pmm1INDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.0450
87.0668
99.9048
30.8983
2060306209822
100.0000
raldana-dualsentieonSNP*map_l100_m0_e0homalt
99.7198
99.5353
99.9050
58.6521
115665411566118
72.7273
astatham-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.1992
98.5033
99.9050
39.1794
210632210321
50.0000
hfeng-pmm2INDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.2379
87.4049
99.9050
31.0740
2068298210322
100.0000
ckim-isaacSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
96.6931
93.6813
99.9050
54.1997
9459638946897
77.7778
ltrigg-rtg1SNP*map_l125_m1_e0homalt
99.7779
99.6510
99.9051
65.6341
1684659168471616
100.0000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
96.5644
93.4397
99.9052
38.7696
105474105411
100.0000
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.4748
95.1598
99.9052
33.6375
2084106210722
100.0000
dgrover-gatkSNPtiHG002compoundhethomalt
99.9121
99.9189
99.9053
30.4654
73886738877
100.0000
astatham-gatkSNPtiHG002compoundhethomalt
99.8918
99.8783
99.9053
30.4740
73859738577
100.0000
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6226
99.3415
99.9054
80.1278
10567105611
100.0000
raldana-dualsentieonSNP*map_l150_m2_e0homalt
99.7131
99.5213
99.9056
69.8863
116435611643118
72.7273
ndellapenna-hhgaSNP*map_l150_m2_e0homalt
99.6916
99.4786
99.9056
72.3853
1163861116381110
90.9091
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5541
99.2049
99.9057
74.5256
212117211921
50.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.2973
98.6962
99.9057
48.2245
423956423941
25.0000
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
96.8657
94.0053
99.9057
45.5875
2117135211921
50.0000
hfeng-pmm3INDELI1_5HG002complexvarhet
99.5309
99.1588
99.9057
57.5378
1803615318015176
35.2941
hfeng-pmm3SNPtifunc_cds*
99.9347
99.9637
99.9057
21.9632
13782513780130
0.0000
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8588
99.8119
99.9058
80.0075
10612106111
100.0000
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6247
99.3452
99.9058
74.7803
212414212221
50.0000
eyeh-varpipeSNPtimap_l150_m2_e0homalt
99.8676
99.8293
99.9058
75.1080
760313742675
71.4286
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8588
99.8119
99.9058
81.3717
10612106111
100.0000
jli-customINDELI1_5HG002complexvarhet
99.6665
99.4282
99.9059
56.5291
1808510418053179
52.9412