PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
71051-71100 / 86044 show all | |||||||||||||||
dgrover-gatk | SNP | * | map_l125_m1_e0 | homalt | 99.6085 | 99.3256 | 99.8929 | 63.9547 | 16791 | 114 | 16791 | 18 | 13 | 72.2222 | |
raldana-dualsentieon | SNP | tv | HG002compoundhet | * | 96.9959 | 94.2620 | 99.8931 | 47.1699 | 8411 | 512 | 8410 | 9 | 5 | 55.5556 | |
raldana-dualsentieon | SNP | * | HG002compoundhet | het | 95.9874 | 92.3755 | 99.8932 | 43.8424 | 13097 | 1081 | 13096 | 14 | 7 | 50.0000 | |
gduggal-bwavard | SNP | ti | map_l100_m2_e1 | homalt | 98.5250 | 97.1937 | 99.8932 | 62.3163 | 17975 | 519 | 17773 | 19 | 15 | 78.9474 | |
ltrigg-rtg1 | INDEL | I1_5 | HG002complexvar | homalt | 99.5102 | 99.1299 | 99.8933 | 45.8849 | 13330 | 117 | 13110 | 14 | 9 | 64.2857 | |
eyeh-varpipe | SNP | * | map_l125_m2_e1 | homalt | 99.8554 | 99.8175 | 99.8934 | 71.0933 | 17500 | 32 | 16871 | 18 | 10 | 55.5556 | |
hfeng-pmm2 | SNP | ti | HG002compoundhet | * | 98.2110 | 96.5843 | 99.8935 | 34.1246 | 16881 | 597 | 16883 | 18 | 7 | 38.8889 | |
hfeng-pmm3 | SNP | ti | HG002compoundhet | * | 98.2879 | 96.7330 | 99.8937 | 34.5867 | 16907 | 571 | 16909 | 18 | 8 | 44.4444 | |
jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.3658 | 98.8433 | 99.8937 | 85.6380 | 940 | 11 | 940 | 1 | 0 | 0.0000 | |
rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8805 | 99.8672 | 99.8937 | 56.0776 | 11281 | 15 | 11280 | 12 | 12 | 100.0000 | |
eyeh-varpipe | SNP | tv | map_siren | homalt | 99.8859 | 99.8782 | 99.8937 | 58.0270 | 17219 | 21 | 16916 | 18 | 8 | 44.4444 | |
ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.3658 | 98.8433 | 99.8937 | 85.4985 | 940 | 11 | 940 | 1 | 1 | 100.0000 | |
ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.3658 | 98.8433 | 99.8937 | 85.4985 | 940 | 11 | 940 | 1 | 1 | 100.0000 | |
ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | homalt | 99.6822 | 99.4715 | 99.8938 | 87.1662 | 941 | 5 | 941 | 1 | 1 | 100.0000 | |
jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4189 | 98.9485 | 99.8938 | 85.6381 | 941 | 10 | 941 | 1 | 1 | 100.0000 | |
astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9292 | 99.9646 | 99.8938 | 56.3468 | 11292 | 4 | 11292 | 12 | 11 | 91.6667 | |
ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9159 | 99.9380 | 99.8938 | 56.3777 | 11289 | 7 | 11284 | 12 | 11 | 91.6667 | |
ckim-isaac | SNP | ti | map_l150_m2_e1 | homalt | 65.7188 | 48.9666 | 99.8939 | 70.0833 | 3767 | 3926 | 3767 | 4 | 4 | 100.0000 | |
astatham-gatk | SNP | * | map_siren | * | 93.7139 | 88.2540 | 99.8939 | 58.6796 | 129052 | 17176 | 129029 | 137 | 67 | 48.9051 | |
ltrigg-rtg2 | SNP | ti | * | * | 99.8963 | 99.8985 | 99.8940 | 15.8136 | 2083396 | 2116 | 2083301 | 2210 | 180 | 8.1448 | |
ltrigg-rtg1 | SNP | ti | map_l125_m2_e0 | homalt | 99.7531 | 99.6126 | 99.8940 | 67.9785 | 11314 | 44 | 11314 | 12 | 12 | 100.0000 | |
asubramanian-gatk | SNP | * | segdup | homalt | 98.2111 | 96.5838 | 99.8941 | 88.4606 | 10376 | 367 | 10376 | 11 | 10 | 90.9091 | |
dgrover-gatk | SNP | ti | map_l150_m2_e0 | homalt | 99.5587 | 99.2253 | 99.8942 | 70.9853 | 7557 | 59 | 7557 | 8 | 6 | 75.0000 | |
rpoplin-dv42 | SNP | ti | func_cds | het | 99.9236 | 99.9530 | 99.8942 | 23.9564 | 8500 | 4 | 8498 | 9 | 2 | 22.2222 | |
ltrigg-rtg1 | SNP | * | map_l100_m2_e0 | homalt | 99.8182 | 99.7420 | 99.8945 | 62.4790 | 27452 | 71 | 27451 | 29 | 26 | 89.6552 | |
gduggal-bwafb | SNP | * | map_l125_m0_e0 | homalt | 99.3333 | 98.7783 | 99.8945 | 72.5403 | 6630 | 82 | 6630 | 7 | 6 | 85.7143 | |
ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.8091 | 97.7471 | 99.8946 | 29.7927 | 1909 | 44 | 1895 | 2 | 2 | 100.0000 | |
ltrigg-rtg2 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.3659 | 98.8427 | 99.8947 | 68.5558 | 30405 | 356 | 30350 | 32 | 26 | 81.2500 | |
rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.8687 | 99.8426 | 99.8949 | 39.6597 | 11415 | 18 | 11408 | 12 | 3 | 25.0000 | |
astatham-gatk | INDEL | I1_5 | HG002complexvar | het | 99.6251 | 99.3568 | 99.8949 | 58.0548 | 18072 | 117 | 18051 | 19 | 9 | 47.3684 | |
ltrigg-rtg1 | SNP | ti | map_l125_m2_e1 | homalt | 99.7553 | 99.6160 | 99.8950 | 68.0185 | 11414 | 44 | 11415 | 12 | 12 | 100.0000 | |
jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7378 | 99.5812 | 99.8950 | 80.4517 | 951 | 4 | 951 | 1 | 1 | 100.0000 | |
hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7378 | 99.5812 | 99.8950 | 79.8902 | 951 | 4 | 951 | 1 | 0 | 0.0000 | |
egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7960 | 99.6973 | 99.8950 | 55.4424 | 17125 | 52 | 17126 | 18 | 14 | 77.7778 | |
ltrigg-rtg2 | SNP | tv | HG002complexvar | het | 99.8062 | 99.7174 | 99.8951 | 21.1944 | 150308 | 426 | 150523 | 158 | 48 | 30.3797 | |
raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7904 | 99.6859 | 99.8951 | 79.4035 | 952 | 3 | 952 | 1 | 1 | 100.0000 | |
ndellapenna-hhga | SNP | * | map_l125_m0_e0 | homalt | 99.5815 | 99.2700 | 99.8951 | 66.7961 | 6663 | 49 | 6663 | 7 | 6 | 85.7143 | |
dgrover-gatk | INDEL | I1_5 | HG002complexvar | het | 99.7798 | 99.6646 | 99.8952 | 58.2404 | 18128 | 61 | 18108 | 19 | 9 | 47.3684 | |
jlack-gatk | SNP | * | map_l100_m1_e0 | homalt | 99.3858 | 98.8816 | 99.8952 | 58.5121 | 26701 | 302 | 26701 | 28 | 22 | 78.5714 | |
hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8428 | 99.7906 | 99.8952 | 79.6675 | 953 | 2 | 953 | 1 | 0 | 0.0000 | |
hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8428 | 99.7906 | 99.8952 | 79.5848 | 953 | 2 | 953 | 1 | 0 | 0.0000 | |
dgrover-gatk | SNP | ti | map_l150_m2_e1 | homalt | 99.5631 | 99.2331 | 99.8953 | 71.0135 | 7634 | 59 | 7634 | 8 | 6 | 75.0000 | |
dgrover-gatk | SNP | * | func_cds | * | 99.9284 | 99.9614 | 99.8954 | 24.8199 | 18143 | 7 | 18140 | 19 | 0 | 0.0000 | |
astatham-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.1948 | 98.5039 | 99.8954 | 68.1029 | 9547 | 145 | 9547 | 10 | 9 | 90.0000 | |
asubramanian-gatk | SNP | * | * | * | 98.9379 | 97.9985 | 99.8954 | 21.0150 | 2993480 | 61139 | 2993343 | 3133 | 150 | 4.7877 | |
ltrigg-rtg1 | SNP | * | map_l100_m2_e1 | homalt | 99.8200 | 99.7446 | 99.8955 | 62.4711 | 27725 | 71 | 27724 | 29 | 26 | 89.6552 | |
jli-custom | SNP | tv | map_l100_m0_e0 | homalt | 99.6481 | 99.4020 | 99.8955 | 59.7962 | 3823 | 23 | 3823 | 4 | 4 | 100.0000 | |
egarrison-hhga | SNP | tv | map_l100_m0_e0 | homalt | 99.7265 | 99.5580 | 99.8956 | 63.0055 | 3829 | 17 | 3829 | 4 | 3 | 75.0000 | |
raldana-dualsentieon | SNP | tv | map_l100_m0_e0 | homalt | 99.7265 | 99.5580 | 99.8956 | 59.9142 | 3829 | 17 | 3829 | 4 | 2 | 50.0000 | |
dgrover-gatk | SNP | * | map_l125_m2_e0 | homalt | 99.6075 | 99.3209 | 99.8958 | 66.5083 | 17257 | 118 | 17257 | 18 | 13 | 72.2222 |