PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
71051-71100 / 86044 show all
dgrover-gatkSNP*map_l125_m1_e0homalt
99.6085
99.3256
99.8929
63.9547
16791114167911813
72.2222
raldana-dualsentieonSNPtvHG002compoundhet*
96.9959
94.2620
99.8931
47.1699
8411512841095
55.5556
raldana-dualsentieonSNP*HG002compoundhethet
95.9874
92.3755
99.8932
43.8424
13097108113096147
50.0000
gduggal-bwavardSNPtimap_l100_m2_e1homalt
98.5250
97.1937
99.8932
62.3163
17975519177731915
78.9474
ltrigg-rtg1INDELI1_5HG002complexvarhomalt
99.5102
99.1299
99.8933
45.8849
1333011713110149
64.2857
eyeh-varpipeSNP*map_l125_m2_e1homalt
99.8554
99.8175
99.8934
71.0933
1750032168711810
55.5556
hfeng-pmm2SNPtiHG002compoundhet*
98.2110
96.5843
99.8935
34.1246
1688159716883187
38.8889
hfeng-pmm3SNPtiHG002compoundhet*
98.2879
96.7330
99.8937
34.5867
1690757116909188
44.4444
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.3658
98.8433
99.8937
85.6380
9401194010
0.0000
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8805
99.8672
99.8937
56.0776
1128115112801212
100.0000
eyeh-varpipeSNPtvmap_sirenhomalt
99.8859
99.8782
99.8937
58.0270
172192116916188
44.4444
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.3658
98.8433
99.8937
85.4985
9401194011
100.0000
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.3658
98.8433
99.8937
85.4985
9401194011
100.0000
ltrigg-rtg1SNPtvmap_l250_m2_e1homalt
99.6822
99.4715
99.8938
87.1662
941594111
100.0000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4189
98.9485
99.8938
85.6381
9411094111
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9292
99.9646
99.8938
56.3468
112924112921211
91.6667
ckim-dragenINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9159
99.9380
99.8938
56.3777
112897112841211
91.6667
ckim-isaacSNPtimap_l150_m2_e1homalt
65.7188
48.9666
99.8939
70.0833
37673926376744
100.0000
astatham-gatkSNP*map_siren*
93.7139
88.2540
99.8939
58.6796
1290521717612902913767
48.9051
ltrigg-rtg2SNPti**
99.8963
99.8985
99.8940
15.8136
2083396211620833012210180
8.1448
ltrigg-rtg1SNPtimap_l125_m2_e0homalt
99.7531
99.6126
99.8940
67.9785
1131444113141212
100.0000
asubramanian-gatkSNP*segduphomalt
98.2111
96.5838
99.8941
88.4606
10376367103761110
90.9091
dgrover-gatkSNPtimap_l150_m2_e0homalt
99.5587
99.2253
99.8942
70.9853
755759755786
75.0000
rpoplin-dv42SNPtifunc_cdshet
99.9236
99.9530
99.8942
23.9564
85004849892
22.2222
ltrigg-rtg1SNP*map_l100_m2_e0homalt
99.8182
99.7420
99.8945
62.4790
2745271274512926
89.6552
gduggal-bwafbSNP*map_l125_m0_e0homalt
99.3333
98.7783
99.8945
72.5403
663082663076
85.7143
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.8091
97.7471
99.8946
29.7927
190944189522
100.0000
ltrigg-rtg2INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.3659
98.8427
99.8947
68.5558
30405356303503226
81.2500
rpoplin-dv42SNP*lowcmp_SimpleRepeat_quadTR_11to50het
99.8687
99.8426
99.8949
39.6597
114151811408123
25.0000
astatham-gatkINDELI1_5HG002complexvarhet
99.6251
99.3568
99.8949
58.0548
1807211718051199
47.3684
ltrigg-rtg1SNPtimap_l125_m2_e1homalt
99.7553
99.6160
99.8950
68.0185
1141444114151212
100.0000
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7378
99.5812
99.8950
80.4517
951495111
100.0000
hfeng-pmm2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7378
99.5812
99.8950
79.8902
951495110
0.0000
egarrison-hhgaSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7960
99.6973
99.8950
55.4424
1712552171261814
77.7778
ltrigg-rtg2SNPtvHG002complexvarhet
99.8062
99.7174
99.8951
21.1944
15030842615052315848
30.3797
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7904
99.6859
99.8951
79.4035
952395211
100.0000
ndellapenna-hhgaSNP*map_l125_m0_e0homalt
99.5815
99.2700
99.8951
66.7961
666349666376
85.7143
dgrover-gatkINDELI1_5HG002complexvarhet
99.7798
99.6646
99.8952
58.2404
181286118108199
47.3684
jlack-gatkSNP*map_l100_m1_e0homalt
99.3858
98.8816
99.8952
58.5121
26701302267012822
78.5714
hfeng-pmm1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8428
99.7906
99.8952
79.6675
953295310
0.0000
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8428
99.7906
99.8952
79.5848
953295310
0.0000
dgrover-gatkSNPtimap_l150_m2_e1homalt
99.5631
99.2331
99.8953
71.0135
763459763486
75.0000
dgrover-gatkSNP*func_cds*
99.9284
99.9614
99.8954
24.8199
18143718140190
0.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50*
99.1948
98.5039
99.8954
68.1029
95471459547109
90.0000
asubramanian-gatkSNP***
98.9379
97.9985
99.8954
21.0150
29934806113929933433133150
4.7877
ltrigg-rtg1SNP*map_l100_m2_e1homalt
99.8200
99.7446
99.8955
62.4711
2772571277242926
89.6552
jli-customSNPtvmap_l100_m0_e0homalt
99.6481
99.4020
99.8955
59.7962
382323382344
100.0000
egarrison-hhgaSNPtvmap_l100_m0_e0homalt
99.7265
99.5580
99.8956
63.0055
382917382943
75.0000
raldana-dualsentieonSNPtvmap_l100_m0_e0homalt
99.7265
99.5580
99.8956
59.9142
382917382942
50.0000
dgrover-gatkSNP*map_l125_m2_e0homalt
99.6075
99.3209
99.8958
66.5083
17257118172571813
72.2222