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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1416 1417 1418 1419 1420 1421 1422 1423 1424 ... 1720 1721 » 70951-71000 / 86044 show all
jlack-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	95.6728	91.8003	99.8864	30.0913	3493	312	3518	4	3	75.0000
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6881	99.4907	99.8864	60.3693	1758	9	1758	2	2	100.0000
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7450	99.6038	99.8865	61.3427	1760	7	1760	2	2	100.0000
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8531	99.8195	99.8867	58.0732	28209	51	28212	32	20	62.5000
dgrover-gatk	SNP	*	*	het	99.9216	99.9564	99.8868	20.4479	1872770	817	1872645	2122	144	6.7861
eyeh-varpipe	SNP	*	map_l100_m2_e0	homalt	99.8725	99.8583	99.8868	65.3085	27484	39	26466	30	16	53.3333
jli-custom	INDEL	D1_5	HG002complexvar	homalt	99.9010	99.9151	99.8868	59.4114	10589	9	10593	12	10	83.3333
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.7239	97.5877	99.8869	55.9761	890	22	883	1	1	100.0000
ltrigg-rtg2	SNP	ti	map_l125_m0_e0	*	98.3571	96.8735	99.8869	59.3116	12363	399	12363	14	4	28.5714
gduggal-bwavard	SNP	ti	map_l125_m1_e0	homalt	98.6148	97.3744	99.8872	66.1535	10755	290	10628	12	9	75.0000
dgrover-gatk	SNP	*	map_l100_m0_e0	homalt	99.5293	99.1738	99.8873	60.6890	11524	96	11524	13	9	69.2308
jmaeng-gatk	SNP	*	segdup	homalt	99.4625	99.0412	99.8873	88.3992	10640	103	10640	12	12	100.0000
jmaeng-gatk	SNP	*	HG002compoundhet	homalt	99.4551	99.0262	99.8877	35.0471	10677	105	10676	12	11	91.6667
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7236	99.5599	99.8877	53.8466	14705	65	15125	17	10	58.8235
eyeh-varpipe	SNP	ti	map_l100_m2_e0	homalt	99.8811	99.8744	99.8878	64.4546	18286	23	17806	20	12	60.0000
rpoplin-dv42	INDEL	I16_PLUS	HG002compoundhet	hetalt	91.7314	84.8065	99.8878	40.3479	1775	318	1781	2	2	100.0000
ltrigg-rtg2	SNP	*	map_l250_m2_e0	homalt	99.6642	99.4415	99.8878	85.5934	2671	15	2671	3	3	100.0000
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5807	99.2754	99.8880	68.6524	16852	123	16941	19	8	42.1053
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5807	99.2754	99.8880	68.6524	16852	123	16941	19	8	42.1053
jli-custom	SNP	ti	map_l125_m0_e0	homalt	99.5980	99.3097	99.8880	64.8868	4460	31	4460	5	5	100.0000
gduggal-bwafb	SNP	ti	map_l100_m1_e0	homalt	99.5923	99.2984	99.8880	61.5927	17834	126	17834	20	12	60.0000
gduggal-bwavard	SNP	*	map_l100_m1_e0	homalt	98.6152	97.3744	99.8881	60.4751	26294	709	25878	29	23	79.3103
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7764	99.6650	99.8881	47.1210	6247	21	6247	7	3	42.8571
ckim-dragen	SNP	ti	map_l100_m1_e0	homalt	99.6288	99.3708	99.8881	54.6776	17847	113	17852	20	19	95.0000
rpoplin-dv42	INDEL	I1_5	HG002complexvar	homalt	99.7169	99.5464	99.8881	51.4705	13387	61	13384	15	14	93.3333
jli-custom	INDEL	I1_5	HG002complexvar	*	99.4264	98.9689	99.8882	55.8919	33019	344	33052	37	27	72.9730
asubramanian-gatk	INDEL	I1_5	HG002complexvar	het	99.1051	98.3342	99.8882	58.4164	17886	303	17868	20	13	65.0000
egarrison-hhga	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8164	99.7447	99.8882	43.9520	6252	16	6253	7	5	71.4286
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt	98.2940	96.7497	99.8884	27.0952	893	30	895	1	1	100.0000
ltrigg-rtg1	SNP	ti	map_l100_m1_e0	homalt	99.8050	99.7216	99.8885	59.4316	17910	50	17910	20	20	100.0000
ltrigg-rtg1	SNP	*	map_l150_m2_e0	homalt	99.7604	99.6324	99.8886	72.6706	11656	43	11658	13	13	100.0000
hfeng-pmm3	INDEL	I1_5	HG002complexvar	*	99.5912	99.2956	99.8886	56.4158	33128	235	33172	37	24	64.8649
hfeng-pmm2	SNP	*	HG002compoundhet	homalt	99.8887	99.8887	99.8887	35.3481	10770	12	10770	12	11	91.6667
astatham-gatk	SNP	tv	map_l100_m1_e0	homalt	99.5729	99.2591	99.8887	59.2933	8976	67	8976	10	6	60.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.0083	98.1431	99.8888	50.8470	1797	34	1797	2	0	0.0000
ltrigg-rtg1	SNP	ti	HG002compoundhet	homalt	98.7135	97.5656	99.8888	29.2249	7214	180	7187	8	7	87.5000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt	98.4617	97.0748	99.8889	26.7101	896	27	899	1	1	100.0000
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.6673	99.4468	99.8889	71.7685	5393	30	5393	6	6	100.0000
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.6673	99.4468	99.8889	71.7685	5393	30	5393	6	6	100.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt	98.4617	97.0748	99.8889	26.7101	896	27	899	1	1	100.0000
ltrigg-rtg2	SNP	*	map_l250_m2_e1	homalt	99.6681	99.4481	99.8891	85.6712	2703	15	2703	3	3	100.0000
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7785	99.6681	99.8891	70.9180	5405	18	5405	6	5	83.3333
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7785	99.6681	99.8891	70.9180	5405	18	5405	6	5	83.3333
jli-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt	98.5175	97.1831	99.8891	27.3167	897	26	901	1	1	100.0000
ckim-vqsr	SNP	ti	HG002compoundhet	*	98.9109	97.9517	99.8891	36.4634	17120	358	17120	19	17	89.4737
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7097	99.5308	99.8892	74.1552	3606	17	3606	4	1	25.0000
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.2845	98.6871	99.8893	67.1756	902	12	902	1	0	0.0000
gduggal-bwafb	SNP	tv	map_siren	homalt	99.6686	99.4490	99.8893	56.7363	17145	95	17145	19	11	57.8947
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7868	99.6845	99.8894	55.8752	25279	80	25282	28	15	53.5714
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.7220	97.5815	99.8894	72.8284	928	23	903	1	1	100.0000

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