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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1415 1416 1417 1418 1419 1420 1421 1422 1423 ... 1720 1721 » 70901-70950 / 86044 show all
ndellapenna-hhga	SNP	tv	map_l125_m2_e1	homalt	99.7279	99.5719	99.8844	68.5879	6048	26	6048	7	6	85.7143
ltrigg-rtg1	SNP	*	map_l150_m1_e0	homalt	99.7513	99.6186	99.8844	70.3814	11230	43	11232	13	13	100.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.5928	93.5112	99.8845	36.3837	1542	107	1729	2	2	100.0000
bgallagher-sentieon	SNP	*	map_l125_m2_e0	homalt	99.7291	99.5741	99.8845	66.0253	17301	74	17301	20	15	75.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.5281	93.3899	99.8846	35.7196	1540	109	1731	2	2	100.0000
ckim-isaac	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	96.9007	94.0899	99.8846	27.3413	2595	163	2596	3	3	100.0000
jli-custom	SNP	ti	map_l250_m2_e0	homalt	99.4256	98.9708	99.8846	85.5643	1731	18	1731	2	2	100.0000
eyeh-varpipe	SNP	*	map_l100_m1_e0	homalt	99.8701	99.8556	99.8846	63.0607	26964	39	25962	30	16	53.3333
gduggal-bwafb	SNP	ti	map_l100_m2_e0	homalt	99.5892	99.2954	99.8846	63.9034	18180	129	18180	21	13	61.9048
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.5605	93.4506	99.8846	36.0517	1541	108	1731	2	2	100.0000
raldana-dualsentieon	SNP	ti	map_l250_m2_e0	homalt	99.4834	99.0852	99.8847	85.3537	1733	16	1733	2	1	50.0000
gduggal-bwafb	SNP	ti	map_l125_m2_e0	homalt	99.5006	99.1196	99.8847	69.9640	11258	100	11258	13	7	53.8462
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.7599	95.7237	99.8847	53.2615	873	39	866	1	1	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8103	99.7360	99.8847	56.3092	14731	39	14733	17	4	23.5294
hfeng-pmm1	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.9701	86.9508	99.8848	40.2923	3325	499	3468	4	4	100.0000
raldana-dualsentieon	SNP	*	*	hetalt	99.7125	99.5408	99.8848	38.3960	867	4	867	1	1	100.0000
raldana-dualsentieon	SNP	tv	*	hetalt	99.7125	99.5408	99.8848	38.3960	867	4	867	1	1	100.0000
jlack-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5984	99.3135	99.8849	60.1010	1736	12	1736	2	2	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8578	99.8307	99.8849	56.2250	14745	25	14747	17	4	23.5294
eyeh-varpipe	SNP	*	map_l150_m2_e0	homalt	99.8398	99.7949	99.8849	75.5076	11675	24	11277	13	8	61.5385
astatham-gatk	SNP	*	map_l125_m2_e1	homalt	99.4760	99.0703	99.8850	66.1765	17369	163	17369	20	16	80.0000
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9204	99.9557	99.8850	56.3788	11291	5	11291	13	12	92.3077
hfeng-pmm3	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6272	99.3707	99.8850	65.1363	1737	11	1737	2	1	50.0000
hfeng-pmm3	SNP	*	*	hetalt	99.8277	99.7704	99.8851	46.7890	869	2	869	1	1	100.0000
hfeng-pmm3	SNP	tv	*	hetalt	99.8277	99.7704	99.8851	46.7890	869	2	869	1	1	100.0000
jli-custom	SNP	*	*	hetalt	99.8277	99.7704	99.8851	43.3225	869	2	869	1	1	100.0000
hfeng-pmm2	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.1791	87.3169	99.8851	40.5059	3339	485	3477	4	4	100.0000
bgallagher-sentieon	SNP	ti	*	het	99.9232	99.9613	99.8851	18.4052	1281395	496	1281341	1474	76	5.1560
jli-custom	SNP	tv	*	hetalt	99.8277	99.7704	99.8851	43.3225	869	2	869	1	1	100.0000
raldana-dualsentieon	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7135	99.5423	99.8852	59.7783	1740	8	1740	2	1	50.0000
gduggal-bwafb	SNP	ti	map_l250_m2_e1	homalt	99.0324	98.1941	99.8852	88.8818	1740	32	1740	2	2	100.0000
eyeh-varpipe	SNP	ti	map_l250_m2_e1	homalt	99.8298	99.7743	99.8854	88.9822	1768	4	1743	2	2	100.0000
rpoplin-dv42	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7997	99.7140	99.8855	65.5220	1743	5	1745	2	1	50.0000
rpoplin-dv42	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.8658	99.8462	99.8855	53.8968	27916	43	27913	32	19	59.3750
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.8267	90.2557	99.8855	32.3046	4307	465	4360	5	4	80.0000
ckim-vqsr	SNP	tv	*	*	99.1585	98.4420	99.8855	27.4583	954582	15108	954496	1094	57	5.2102
hfeng-pmm2	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3785	98.8765	99.8856	58.5898	55006	625	54996	63	10	15.8730
eyeh-varpipe	SNP	ti	map_l100_m1_e0	homalt	99.8788	99.8719	99.8856	62.1452	17937	23	17464	20	12	60.0000
bgallagher-sentieon	SNP	*	map_l125_m2_e1	homalt	99.7315	99.5779	99.8856	66.0476	17458	74	17458	20	15	75.0000
ndellapenna-hhga	SNP	tv	func_cds	*	99.9314	99.9771	99.8857	28.0901	4370	1	4370	5	0	0.0000
gduggal-bwafb	SNP	ti	map_l125_m2_e1	homalt	99.5050	99.1272	99.8857	70.0171	11358	100	11358	13	7	53.8462
gduggal-bwafb	SNP	ti	map_l100_m2_e1	homalt	99.5933	99.3025	99.8858	63.9101	18365	129	18365	21	13	61.9048
gduggal-bwavard	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	95.8055	92.0455	99.8858	53.9432	891	77	875	1	1	100.0000
eyeh-varpipe	SNP	*	map_l150_m2_e1	homalt	99.8415	99.7971	99.8860	75.5645	11803	24	11393	13	8	61.5385
hfeng-pmm2	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0510	98.2298	99.8861	53.8211	17535	316	17534	20	1	5.0000
hfeng-pmm3	INDEL	D1_5	*	*	99.5137	99.1441	99.8861	56.7122	145489	1256	145542	166	109	65.6627
jli-custom	SNP	ti	map_l250_m2_e1	homalt	99.4331	98.9842	99.8861	85.6066	1754	18	1754	2	2	100.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	98.9667	98.0640	99.8862	50.8114	2634	52	2634	3	0	0.0000
raldana-dualsentieon	SNP	ti	map_l250_m2_e1	homalt	99.4901	99.0971	99.8862	85.3999	1756	16	1756	2	1	50.0000
ndellapenna-hhga	SNP	tv	HG002complexvar	homalt	99.8464	99.8065	99.8864	22.8760	94927	184	94935	108	97	89.8148

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