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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1410 1411 1412 1413 1414 1415 1416 1417 1418 ... 1720 1721 » 70651-70700 / 86044 show all
asubramanian-gatk	SNP	tv	map_l100_m0_e0	*	43.7760	28.0314	99.8714	92.3134	3107	7977	3107	4	1	25.0000
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.3479	98.8298	99.8715	53.0817	3885	46	3885	5	0	0.0000
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.8537	97.8565	99.8715	37.6633	10135	222	10103	13	13	100.0000
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.1071	98.3544	99.8715	46.8458	2331	39	2331	3	3	100.0000
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7436	99.6160	99.8716	27.5888	3891	15	3890	5	1	20.0000
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7565	99.6416	99.8717	29.3435	3892	14	3891	5	1	20.0000
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6416	99.4125	99.8717	75.1815	3892	23	3892	5	5	100.0000
jlack-gatk	SNP	*	map_l125_m2_e0	homalt	99.2238	98.5842	99.8717	66.9110	17129	246	17129	22	16	72.7273
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.8470	99.8221	99.8718	54.9751	6173	11	6232	8	2	25.0000
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8860	99.9003	99.8718	61.7413	7012	7	7013	9	1	11.1111
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8504	99.8290	99.8718	59.4899	7007	12	7011	9	6	66.6667
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5662	99.2623	99.8720	56.6274	3902	29	3902	5	0	0.0000
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.8720	99.8720	99.8720	30.2429	3901	5	3900	5	1	20.0000
ltrigg-rtg1	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5400	99.2100	99.8721	70.2148	30518	243	30461	39	32	82.0513
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4278	98.9873	99.8723	47.9734	1564	16	1564	2	0	0.0000
hfeng-pmm2	INDEL	I1_5	HG002complexvar	het	99.4756	99.0819	99.8724	57.6818	18022	167	18002	23	11	47.8261
mlin-fermikit	SNP	*	*	het	98.7978	97.7460	99.8724	15.9070	1831370	42231	1831279	2340	46	1.9658
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7452	99.6183	99.8724	62.7730	783	3	783	1	0	0.0000
jlack-gatk	INDEL	I1_5	*	hetalt	94.8892	90.3796	99.8725	62.8887	10118	1077	10180	13	12	92.3077
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	98.5415	97.2452	99.8728	66.2892	9425	267	9425	12	5	41.6667
hfeng-pmm3	SNP	*	map_l100_m2_e0	homalt	99.8546	99.8365	99.8728	63.2901	27478	45	27478	35	17	48.5714
hfeng-pmm1	SNP	*	map_l100_m2_e0	homalt	99.8583	99.8438	99.8728	63.3749	27480	43	27480	35	17	48.5714
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.8252	99.7776	99.8728	71.9221	3141	7	3141	4	3	75.0000
ndellapenna-hhga	SNP	tv	map_l150_m1_e0	homalt	99.6826	99.4932	99.8728	70.1019	3926	20	3926	5	4	80.0000
jlack-gatk	SNP	*	map_l125_m2_e1	homalt	99.2279	98.5911	99.8729	66.9215	17285	247	17285	22	16	72.7273
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.8570	99.8412	99.8729	71.3127	3143	5	3143	4	3	75.0000
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.8411	99.8094	99.8729	71.5397	3142	6	3142	4	3	75.0000
gduggal-bwafb	SNP	ti	map_l250_m1_e0	homalt	98.9956	98.1332	99.8733	88.0983	1577	30	1577	2	2	100.0000
rpoplin-dv42	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.8590	99.8446	99.8734	64.1005	27635	43	27622	35	19	54.2857
ltrigg-rtg2	SNP	ti	map_l125_m0_e0	het	97.6557	95.5343	99.8735	55.0552	7894	369	7894	10	0	0.0000
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8014	99.7293	99.8736	52.3918	11054	30	11063	14	9	64.2857
ckim-isaac	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.3899	96.9496	99.8736	43.2587	3941	124	3951	5	2	40.0000
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	91.2201	83.9465	99.8737	37.5887	753	144	791	1	1	100.0000
eyeh-varpipe	SNP	ti	map_l250_m1_e0	homalt	99.8123	99.7511	99.8737	88.1405	1603	4	1581	2	2	100.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	91.2859	84.0580	99.8737	41.1152	754	143	791	1	1	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8383	99.8028	99.8737	55.5058	25309	50	25307	32	17	53.1250
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	91.2201	83.9465	99.8737	37.5887	753	144	791	1	1	100.0000
eyeh-varpipe	SNP	ti	HG002complexvar	*	99.8888	99.9038	99.8738	17.3355	507948	489	484239	612	191	31.2092
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	98.2352	96.6493	99.8739	41.6507	3894	135	3961	5	5	100.0000
hfeng-pmm1	SNP	*	map_l100_m2_e1	homalt	99.8597	99.8453	99.8740	63.3660	27753	43	27753	35	17	48.5714
hfeng-pmm3	SNP	*	map_l100_m2_e1	homalt	99.8561	99.8381	99.8740	63.2761	27751	45	27751	35	17	48.5714
ckim-isaac	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	94.3567	89.4171	99.8741	46.5320	1580	187	1586	2	1	50.0000
cchapple-custom	INDEL	C1_5	*	homalt	0.0000	0.0000	99.8741	90.5081	0	0	793	1	1	100.0000
cchapple-custom	INDEL	C1_5	HG002complexvar	homalt	0.0000	0.0000	99.8741	75.9175	0	0	793	1	1	100.0000
ckim-vqsr	INDEL	D1_5	HG002complexvar	het	99.6767	99.4799	99.8743	56.3731	20657	108	20661	26	12	46.1538
jli-custom	SNP	ti	map_l250_m1_e0	homalt	99.3746	98.8799	99.8743	84.2895	1589	18	1589	2	2	100.0000
ltrigg-rtg2	SNP	ti	map_l150_m1_e0	het	98.1622	96.5077	99.8745	59.1812	11938	432	11940	15	1	6.6667
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.0605	98.2598	99.8745	43.2288	1581	28	1591	2	2	100.0000
raldana-dualsentieon	SNP	ti	map_l250_m1_e0	homalt	99.4375	99.0044	99.8745	84.1493	1591	16	1591	2	1	50.0000
ndellapenna-hhga	SNP	ti	map_siren	*	99.5376	99.2028	99.8746	51.9628	99555	800	99557	125	60	48.0000

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