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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
70451-70500 / 86044 show all
asubramanian-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.2099
98.5704
99.8579
70.2128
262038281044
100.0000
ltrigg-rtg1INDELI6_15*hetalt
94.9898
90.5742
99.8580
43.9696
774580677381110
90.9091
gduggal-bwafbSNPtvmap_l100_m2_e0homalt
99.6083
99.3597
99.8582
65.9435
9155599155137
53.8462
asubramanian-gatkINDELD1_5HG002complexvarhomalt
99.7403
99.6226
99.8582
60.0860
1055840105651513
86.6667
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.2816
94.8346
99.8583
45.6289
6334345634197
77.7778
gduggal-snapplatSNP*map_l125_m0_e0homalt
91.2357
83.9839
99.8583
72.7044
56371075563788
100.0000
asubramanian-gatkSNPtimap_l100_m2_e1*
62.6607
45.6542
99.8585
84.1129
2259226893225883212
37.5000
asubramanian-gatkSNPtimap_l125_m0_e0*
36.2073
22.1125
99.8585
94.7728
28229940282244
100.0000
gduggal-bwavardSNP*map_l125_m1_e0homalt
98.6701
97.5096
99.8585
66.2879
16484421162342318
78.2609
ltrigg-rtg1SNP***
99.8754
99.8921
99.8587
17.5113
3051330329630515184317267
6.1849
ltrigg-rtg2SNP*map_l150_m2_e0*
98.7380
97.6422
99.8587
65.4099
3110175131104449
20.4545
hfeng-pmm3SNPtvmap_l100_m2_e0homalt
99.8317
99.8046
99.8588
64.7570
9196189196135
38.4615
astatham-gatkSNP*HG002compoundhet*
99.2284
98.6058
99.8588
41.2826
25462360254553634
94.4444
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7040
99.5496
99.8589
54.8699
163557416278238
34.7826
gduggal-snapplatSNP*map_l250_m2_e0homalt
88.2609
79.0767
99.8589
89.3960
2124562212333
100.0000
gduggal-snapplatSNPtimap_l150_m1_e0homalt
93.0222
87.0616
99.8589
71.6753
6379948637099
100.0000
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3683
98.8824
99.8589
49.4773
424748424760
0.0000
hfeng-pmm1SNPtvmap_l100_m2_e0homalt
99.8535
99.8481
99.8589
64.8359
9200149200135
38.4615
hfeng-pmm1SNPtifunc_cdshet
99.9060
99.9530
99.8590
22.2902
850048498120
0.0000
dgrover-gatkSNPtifunc_cdshet
99.9118
99.9647
99.8590
25.0066
850138499120
0.0000
ckim-isaacSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.1734
94.6284
99.8591
48.1340
191141085191382718
66.6667
hfeng-pmm2SNP*map_l100_m1_e0homalt
99.8648
99.8704
99.8593
60.9853
2696835269683819
50.0000
jli-customINDELD1_5*het
99.7840
99.7088
99.8593
56.7542
873192558731312365
52.8455
egarrison-hhgaSNPtimap_l100_m1_e0*
99.5648
99.2719
99.8594
62.6430
47582349475836731
46.2687
gduggal-bwafbSNPtvmap_l100_m2_e1homalt
99.6066
99.3550
99.8595
65.9755
9242609242137
53.8462
jmaeng-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.7896
99.7197
99.8596
27.8116
14234142322
100.0000
ckim-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.7545
99.6496
99.8596
26.6735
14225142222
100.0000
jlack-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.8949
99.9299
99.8599
26.8443
14261142622
100.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9300
100.0000
99.8600
29.0467
14270142721
50.0000
hfeng-pmm2SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9300
100.0000
99.8600
30.7319
14270142721
50.0000
ltrigg-rtg1INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.3225
98.7905
99.8601
50.4916
359444357053
60.0000
hfeng-pmm3SNPtvmap_l100_m2_e1homalt
99.8333
99.8065
99.8602
64.7574
9284189284135
38.4615
hfeng-pmm1SNPtvmap_l100_m2_e1homalt
99.8549
99.8495
99.8602
64.8422
9288149288135
38.4615
cchapple-customSNPtvHG002complexvarhet
99.7615
99.6630
99.8602
21.5432
150223508149954210146
69.5238
ltrigg-rtg2SNP*map_l150_m2_e1*
98.7491
97.6622
99.8603
65.5073
3145775331463449
20.4545
jpowers-varprowlSNPtiHG002complexvarhet
99.4252
98.9938
99.8603
18.1914
311597316731170743690
20.6422
hfeng-pmm3INDELI1_5*het
99.7016
99.5433
99.8604
59.2337
786803617866111051
46.3636
hfeng-pmm1SNP*map_siren*
99.7072
99.5541
99.8607
53.5315
14557665214555620364
31.5271
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
99.9535
99.8607
47.4506
21511215133
100.0000
gduggal-snapplatSNP*map_l250_m2_e1homalt
88.3005
79.1391
99.8607
89.4279
2151567215033
100.0000
astatham-gatkSNP*map_l100_m0_e0homalt
99.3208
98.7866
99.8608
60.2139
11479141114791612
75.0000
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9303
100.0000
99.8608
45.9493
21520215233
100.0000
jli-customINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9303
100.0000
99.8608
46.0035
21520215233
100.0000
ltrigg-rtg2INDELI1_5HG002compoundhethetalt
98.4111
97.0028
99.8609
64.1248
10842335107681515
100.0000
bgallagher-sentieonSNP*HG002compoundhethomalt
99.8887
99.9165
99.8609
34.8774
107739107681514
93.3333
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8263
99.7917
99.8610
69.1268
14373143721
50.0000
gduggal-bwafbSNP*map_l100_m0_e0homalt
99.4296
99.0017
99.8611
65.4925
11504116115041610
62.5000
raldana-dualsentieonINDEL*HG002complexvarhetalt
95.3862
91.2949
99.8613
67.7087
3377322360055
100.0000
ltrigg-rtg2INDEL*HG002complexvarhomalt
99.4106
98.9640
99.8613
51.7784
26746280266313727
72.9730
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6312
99.4020
99.8614
63.7399
216113216130
0.0000