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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1404 1405 1406 1407 1408 1409 1410 1411 1412 ... 1720 1721 » 70351-70400 / 86044 show all
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9261	100.0000	99.8524	72.8729	1353	0	1353	2	1	50.0000
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9261	100.0000	99.8524	72.4033	1353	0	1353	2	0	0.0000
hfeng-pmm3	SNP	tv	HG002compoundhet	homalt	99.8376	99.8229	99.8524	42.5250	3382	6	3382	5	5	100.0000
ckim-dragen	SNP	tv	HG002compoundhet	homalt	99.8672	99.8819	99.8524	43.2020	3384	4	3383	5	5	100.0000
hfeng-pmm3	INDEL	D16_PLUS	*	hetalt	96.6173	93.5851	99.8525	38.5313	1809	124	2031	3	3	100.0000
jli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.3256	94.9234	99.8525	39.2800	3347	179	3385	5	5	100.0000
jli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.3256	94.9234	99.8525	39.2800	3347	179	3385	5	5	100.0000
hfeng-pmm1	INDEL	D16_PLUS	*	hetalt	96.6724	93.6886	99.8525	38.6610	1811	122	2031	3	3	100.0000
asubramanian-gatk	SNP	*	map_l100_m1_e0	*	60.2018	43.0908	99.8527	84.6729	31199	41204	31193	46	12	26.0870
astatham-gatk	INDEL	I1_5	HG002complexvar	*	99.6397	99.4275	99.8527	57.1222	33172	191	33219	49	39	79.5918
ltrigg-rtg2	SNP	*	map_l250_m2_e0	*	97.1607	94.6100	99.8528	80.6416	7460	425	7460	11	4	36.3636
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.8160	99.7792	99.8528	43.7655	4068	9	4071	6	1	16.6667
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	98.9155	97.9955	99.8529	70.5060	6111	125	6111	9	8	88.8889
dgrover-gatk	INDEL	I1_5	HG002complexvar	*	99.7285	99.6044	99.8530	57.2674	33231	132	33279	49	38	77.5510
ltrigg-rtg2	SNP	ti	map_l250_m2_e0	*	97.3703	95.0080	99.8532	81.1041	4758	250	4761	7	4	57.1429
cchapple-custom	SNP	ti	segdup	homalt	99.8600	99.8668	99.8533	87.0523	7495	10	7487	11	11	100.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	86.0332	75.5734	99.8536	26.3215	659	213	682	1	1	100.0000
egarrison-hhga	SNP	ti	map_l100_m2_e1	*	99.5683	99.2846	99.8537	64.5157	49131	354	49132	72	32	44.4444
dgrover-gatk	SNP	tv	map_l150_m2_e1	homalt	99.4413	99.0324	99.8537	71.5870	4094	40	4094	6	4	66.6667
ckim-isaac	SNP	ti	map_siren	het	88.1134	78.8433	99.8538	52.2793	49184	13198	49191	72	6	8.3333
asubramanian-gatk	SNP	*	*	het	98.9725	98.1066	99.8538	23.0377	1838113	35474	1837999	2691	109	4.0505
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6719	99.4905	99.8539	72.1465	1367	7	1367	2	0	0.0000
ndellapenna-hhga	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8356	99.8174	99.8539	32.2109	2733	5	2734	4	3	75.0000
ltrigg-rtg2	SNP	tv	map_l250_m2_e1	*	96.8015	93.9300	99.8540	79.7875	2739	177	2736	4	0	0.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6719	99.4905	99.8540	71.6062	1367	7	1368	2	0	0.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6719	99.4905	99.8540	71.8223	1367	7	1368	2	0	0.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6719	99.4905	99.8540	71.2728	1367	7	1368	2	0	0.0000
hfeng-pmm2	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3792	98.9089	99.8541	63.0972	27376	302	27367	40	7	17.5000
raldana-dualsentieon	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7085	99.5633	99.8541	71.1368	1368	6	1369	2	0	0.0000
egarrison-hhga	SNP	ti	map_l100_m2_e0	*	99.5647	99.2770	99.8541	64.5210	48607	354	48608	71	32	45.0704
ltrigg-rtg2	SNP	ti	map_l150_m0_e0	homalt	99.5276	99.2032	99.8541	71.1520	2739	22	2738	4	4	100.0000
ltrigg-rtg2	SNP	ti	map_l250_m1_e0	het	95.8290	92.1159	99.8541	75.2192	2734	234	2737	4	1	25.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7450	99.6361	99.8542	72.0228	1369	5	1370	2	0	0.0000
gduggal-bwafb	SNP	ti	map_l150_m2_e0	homalt	99.3999	98.9496	99.8542	74.6089	7536	80	7536	11	6	54.5455
ndellapenna-hhga	SNP	ti	map_l150_m0_e0	homalt	99.5641	99.2756	99.8543	71.8779	2741	20	2741	4	4	100.0000
rpoplin-dv42	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.8628	99.8712	99.8543	55.6453	17828	23	17825	26	14	53.8462
jli-custom	SNP	ti	map_l150_m0_e0	homalt	99.6006	99.3481	99.8544	71.0140	2743	18	2743	4	4	100.0000
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6549	99.4561	99.8544	38.0748	2743	15	2743	4	4	100.0000
ltrigg-rtg2	INDEL	D6_15	*	homalt	99.1477	98.4508	99.8545	42.0407	6228	98	6177	9	7	77.7778
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.2720	98.6962	99.8546	54.0539	8251	109	8239	12	12	100.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.2720	98.6962	99.8546	54.0539	8251	109	8239	12	12	100.0000
ckim-dragen	SNP	tv	HG002compoundhet	*	99.7984	99.7422	99.8546	49.3913	8900	23	8925	13	8	61.5385
ltrigg-rtg2	SNP	*	map_l250_m2_e1	*	97.1847	94.6538	99.8547	80.7686	7560	427	7560	11	4	36.3636
egarrison-hhga	SNP	ti	map_l150_m0_e0	homalt	99.7098	99.5654	99.8547	73.4497	2749	12	2749	4	4	100.0000
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.6740	99.4939	99.8549	58.0900	1376	7	1376	2	1	50.0000
hfeng-pmm3	SNP	ti	HG002compoundhet	het	96.8798	94.0768	99.8549	38.2659	8942	563	8944	13	3	23.0769
hfeng-pmm3	INDEL	D1_5	segdup	het	99.6380	99.4220	99.8551	93.8431	688	4	689	1	0	0.0000
raldana-dualsentieon	INDEL	D1_5	segdup	het	99.6380	99.4220	99.8551	93.9785	688	4	689	1	0	0.0000
jli-custom	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.7828	99.7106	99.8551	69.0939	4823	14	4823	7	4	57.1429
ltrigg-rtg2	SNP	ti	map_l250_m2_e1	*	97.3857	95.0355	99.8552	81.2214	4824	252	4827	7	4	57.1429

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