PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70301-70350 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | tv | func_cds | het | 99.9248 | 100.0000 | 99.8497 | 29.2851 | 2657 | 0 | 2657 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.0508 | 98.2646 | 99.8497 | 54.9729 | 1359 | 24 | 1329 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.7544 | 73.6239 | 99.8498 | 26.3274 | 642 | 230 | 665 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | HG002compoundhet | * | 99.3792 | 98.9129 | 99.8498 | 36.3432 | 17288 | 190 | 17288 | 26 | 22 | 84.6154 | |
| ckim-gatk | SNP | ti | HG002compoundhet | * | 99.4312 | 99.0159 | 99.8500 | 36.2044 | 17306 | 172 | 17306 | 26 | 21 | 80.7692 | |
| bgallagher-sentieon | SNP | tv | map_l125_m2_e0 | homalt | 99.7171 | 99.5845 | 99.8500 | 66.6926 | 5992 | 25 | 5992 | 9 | 6 | 66.6667 | |
| asubramanian-gatk | SNP | ti | map_l100_m0_e0 | * | 46.8392 | 30.5957 | 99.8501 | 90.3797 | 6661 | 15110 | 6661 | 10 | 5 | 50.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | HG002complexvar | hetalt | 97.5431 | 95.3402 | 99.8501 | 71.8149 | 1289 | 63 | 1332 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.0979 | 96.4062 | 99.8501 | 81.6005 | 3997 | 149 | 3997 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | SNP | ti | map_l125_m2_e0 | homalt | 99.8195 | 99.7887 | 99.8502 | 68.6124 | 11334 | 24 | 11334 | 17 | 7 | 41.1765 | |
| gduggal-snapplat | SNP | * | map_l150_m0_e0 | homalt | 89.7981 | 81.5847 | 99.8503 | 78.9397 | 3336 | 753 | 3336 | 5 | 5 | 100.0000 | |
| raldana-dualsentieon | SNP | * | map_l125_m0_e0 | homalt | 99.6192 | 99.3892 | 99.8503 | 65.6627 | 6671 | 41 | 6671 | 10 | 7 | 70.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | HG002complexvar | hetalt | 97.7751 | 95.7840 | 99.8506 | 73.3373 | 1295 | 57 | 1337 | 2 | 0 | 0.0000 | |
| astatham-gatk | SNP | tv | map_l125_m2_e1 | homalt | 99.4462 | 99.0451 | 99.8506 | 66.8391 | 6016 | 58 | 6016 | 9 | 6 | 66.6667 | |
| ltrigg-rtg1 | SNP | * | map_l125_m0_e0 | homalt | 99.7091 | 99.5679 | 99.8506 | 69.2643 | 6683 | 29 | 6683 | 10 | 10 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 84.1376 | 72.6976 | 99.8506 | 49.3441 | 2005 | 753 | 2005 | 3 | 3 | 100.0000 | |
| ckim-dragen | SNP | ti | map_l125_m2_e1 | homalt | 99.5580 | 99.2669 | 99.8508 | 63.2612 | 11374 | 84 | 11379 | 17 | 16 | 94.1176 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.1335 | 74.1972 | 99.8510 | 26.9063 | 647 | 225 | 670 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | * | homalt | 99.5524 | 99.2554 | 99.8512 | 52.3128 | 124239 | 932 | 124115 | 185 | 162 | 87.5676 | |
| ckim-gatk | SNP | tv | HG002compoundhet | homalt | 99.4517 | 99.0555 | 99.8512 | 42.9154 | 3356 | 32 | 3355 | 5 | 4 | 80.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.2090 | 74.3119 | 99.8512 | 25.9912 | 648 | 224 | 671 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.3087 | 93.0088 | 99.8513 | 37.7661 | 1796 | 135 | 2014 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.3087 | 93.0088 | 99.8513 | 37.7661 | 1796 | 135 | 2014 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | HG002complexvar | hetalt | 97.9678 | 96.1538 | 99.8514 | 73.2565 | 1300 | 52 | 1344 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | HG002complexvar | homalt | 99.8625 | 99.8736 | 99.8514 | 52.0252 | 13431 | 17 | 13435 | 20 | 17 | 85.0000 | |
| bgallagher-sentieon | SNP | tv | map_l125_m2_e1 | homalt | 99.7197 | 99.5884 | 99.8514 | 66.7125 | 6049 | 25 | 6049 | 9 | 6 | 66.6667 | |
| jli-custom | SNP | * | func_cds | * | 99.9036 | 99.9559 | 99.8514 | 23.3699 | 18142 | 8 | 18142 | 27 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7994 | 99.7475 | 99.8514 | 49.4629 | 6716 | 17 | 6718 | 10 | 6 | 60.0000 | |
| hfeng-pmm1 | SNP | ti | map_l125_m2_e1 | homalt | 99.8210 | 99.7905 | 99.8515 | 68.6411 | 11434 | 24 | 11434 | 17 | 7 | 41.1765 | |
| jlack-gatk | SNP | * | HG002compoundhet | homalt | 99.8516 | 99.8516 | 99.8515 | 34.5857 | 10766 | 16 | 10761 | 16 | 15 | 93.7500 | |
| raldana-dualsentieon | INDEL | D16_PLUS | * | hetalt | 96.3126 | 93.0160 | 99.8515 | 37.8079 | 1798 | 135 | 2017 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7242 | 99.5972 | 99.8516 | 52.5270 | 10137 | 41 | 10092 | 15 | 11 | 73.3333 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6187 | 99.3868 | 99.8516 | 38.0325 | 4052 | 25 | 4038 | 6 | 2 | 33.3333 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6803 | 99.5094 | 99.8517 | 35.3111 | 4057 | 20 | 4039 | 6 | 4 | 66.6667 | |
| dgrover-gatk | SNP | tv | map_l150_m2_e0 | homalt | 99.4343 | 99.0203 | 99.8518 | 71.6158 | 4043 | 40 | 4043 | 6 | 4 | 66.6667 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.5100 | 74.7706 | 99.8519 | 27.0270 | 652 | 220 | 674 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.5395 | 97.2611 | 99.8520 | 63.6434 | 4723 | 133 | 4723 | 7 | 5 | 71.4286 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6963 | 93.7338 | 99.8521 | 39.0808 | 1810 | 121 | 2025 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.6963 | 93.7338 | 99.8521 | 39.0808 | 1810 | 121 | 2025 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e0 | * | 96.7626 | 93.8584 | 99.8522 | 79.6388 | 2705 | 177 | 2702 | 4 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5215 | 99.1930 | 99.8523 | 76.2248 | 1352 | 11 | 1352 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l150_m0_e0 | homalt | 99.5215 | 99.1930 | 99.8523 | 72.7346 | 4056 | 33 | 4056 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6688 | 93.6820 | 99.8523 | 38.6219 | 1809 | 122 | 2028 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.6688 | 93.6820 | 99.8523 | 38.6219 | 1809 | 122 | 2028 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | * | hetalt | 96.6998 | 93.7403 | 99.8523 | 39.1187 | 1812 | 121 | 2028 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6136 | 93.5785 | 99.8523 | 38.4918 | 1807 | 124 | 2028 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.6136 | 93.5785 | 99.8523 | 38.4918 | 1807 | 124 | 2028 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | map_siren | * | 99.7701 | 99.6881 | 99.8523 | 52.8057 | 100042 | 313 | 100027 | 148 | 25 | 16.8919 | |
| hfeng-pmm1 | SNP | tv | HG002compoundhet | homalt | 99.8229 | 99.7934 | 99.8523 | 42.7460 | 3381 | 7 | 3381 | 5 | 5 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.6241 | 97.4259 | 99.8523 | 63.8155 | 4731 | 125 | 4731 | 7 | 6 | 85.7143 | |