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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1400 1401 1402 1403 1404 1405 1406 1407 1408 ... 1720 1721 » 70151-70200 / 86044 show all
jpowers-varprowl	SNP	*	HG002complexvar	het	99.3948	98.9553	99.8382	20.0313	460632	4863	460862	747	150	20.0803
gduggal-snapvard	SNP	ti	HG002complexvar	homalt	98.1979	96.6107	99.8382	17.7966	186907	6557	182591	296	181	61.1486
ckim-dragen	SNP	tv	map_l100_m2_e1	homalt	99.6770	99.5162	99.8382	60.2316	9257	45	9257	15	13	86.6667
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.7576	99.6772	99.8383	36.6060	2470	8	2469	4	0	0.0000
gduggal-bwavard	SNP	ti	map_l150_m2_e1	homalt	98.6309	97.4522	99.8384	73.3079	7497	196	7414	12	9	75.0000
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	95.2859	91.1304	99.8384	63.0944	4942	481	4944	8	5	62.5000
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	95.2859	91.1304	99.8384	63.0944	4942	481	4944	8	5	62.5000
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.8385	99.8386	99.8385	31.8944	2474	4	2473	4	0	0.0000
ltrigg-rtg1	INDEL	*	HG002complexvar	homalt	99.4013	98.9677	99.8388	52.4987	26747	279	26629	43	32	74.4186
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.2800	98.7275	99.8388	67.9580	1862	24	1858	3	3	100.0000
ndellapenna-hhga	SNP	ti	map_l100_m2_e1	*	99.3624	98.8906	99.8388	63.3822	48936	549	48938	79	40	50.6329
ltrigg-rtg2	SNP	*	map_l125_m2_e0	*	98.9920	98.1594	99.8389	61.3454	45863	860	45865	74	15	20.2703
ltrigg-rtg2	SNP	ti	map_l250_m1_e0	*	97.1749	94.6495	99.8389	79.6190	4334	245	4337	7	4	57.1429
gduggal-bwafb	SNP	*	map_l150_m1_e0	homalt	99.3896	98.9444	99.8389	72.9039	11154	119	11154	18	11	61.1111
gduggal-bwavard	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	97.6609	95.5759	99.8390	31.3433	1253	58	1240	2	1	50.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6384	99.4387	99.8390	60.5902	2480	14	2480	4	0	0.0000
hfeng-pmm3	SNP	*	map_siren	*	99.7673	99.6957	99.8390	54.1028	145783	445	145760	235	40	17.0213
ndellapenna-hhga	SNP	ti	map_l100_m2_e0	*	99.3576	98.8807	99.8392	63.3838	48413	548	48415	78	40	51.2821
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6118	99.3853	99.8394	49.0173	11802	73	11810	19	12	63.1579
jli-custom	INDEL	*	HG002complexvar	het	99.4410	99.0457	99.8394	56.1111	45771	441	45384	73	32	43.8356
egarrison-hhga	SNP	*	map_l100_m2_e0	*	99.5430	99.2483	99.8395	64.7214	73408	556	73409	118	50	42.3729
ltrigg-rtg2	SNP	ti	map_l100_m1_e0	*	99.2402	98.6481	99.8395	53.2325	47283	648	47285	76	17	22.3684
jmaeng-gatk	INDEL	D1_5	HG002complexvar	homalt	99.8538	99.8679	99.8397	60.1891	10584	14	10591	17	15	88.2353
egarrison-hhga	SNP	*	map_l100_m2_e1	*	99.5464	99.2547	99.8398	64.7282	74180	557	74181	119	50	42.0168
hfeng-pmm3	INDEL	*	HG002complexvar	het	98.8973	97.9724	99.8399	56.4422	45275	937	44901	72	42	58.3333
gduggal-snapplat	SNP	ti	map_l100_m0_e0	homalt	93.7346	88.3329	99.8399	63.4054	6867	907	6860	11	11	100.0000
dgrover-gatk	SNP	tv	func_cds	*	99.9085	99.9771	99.8400	29.8268	4370	1	4369	7	0	0.0000
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.3003	93.0030	99.8400	33.3511	2459	185	2496	4	4	100.0000
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.3003	93.0030	99.8400	33.3511	2459	185	2496	4	4	100.0000
hfeng-pmm2	SNP	tv	func_cds	*	99.9200	100.0000	99.8401	29.0024	4371	0	4370	7	0	0.0000
ckim-vqsr	SNP	ti	HG002compoundhet	het	99.2006	98.5692	99.8402	40.6564	9369	136	9369	15	13	86.6667
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7343	99.6285	99.8404	58.9273	28155	105	28158	45	20	44.4444
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7095	99.5789	99.8404	58.9584	28141	119	28144	45	19	42.2222
raldana-dualsentieon	SNP	ti	func_cds	*	99.8985	99.9565	99.8406	21.8782	13781	6	13779	22	0	0.0000
hfeng-pmm1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7612	99.6819	99.8407	71.1771	1880	6	1880	3	2	66.6667
ckim-gatk	INDEL	D1_5	HG002complexvar	het	99.7759	99.7111	99.8409	56.3066	20705	60	20710	33	15	45.4545
raldana-dualsentieon	INDEL	I16_PLUS	HG002complexvar	het	98.7816	97.7444	99.8410	62.2675	650	15	628	1	1	100.0000
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.8093	99.7776	99.8411	72.0082	3141	7	3141	5	3	60.0000
gduggal-snapvard	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.0133	98.1991	99.8412	55.4691	3817	70	3772	6	3	50.0000
jmaeng-gatk	SNP	tv	map_l150_m0_e0	homalt	64.3185	47.4398	99.8415	86.2587	630	698	630	1	1	100.0000
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4277	99.0173	99.8415	46.1817	2519	25	2519	4	0	0.0000
hfeng-pmm3	SNP	ti	map_l125_m2_e0	homalt	99.8195	99.7975	99.8415	68.5286	11335	23	11335	18	8	44.4444
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4872	99.1352	99.8416	45.8405	2522	22	2522	4	0	0.0000
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.8256	93.9864	99.8416	36.8816	2485	159	2522	4	4	100.0000
ckim-vqsr	SNP	tv	segdup	homalt	98.5612	97.3132	99.8416	90.0895	3151	87	3151	5	5	100.0000
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.1472	92.7162	99.8418	68.4316	611	48	631	1	1	100.0000
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.1472	92.7162	99.8418	68.4316	611	48	631	1	1	100.0000
ndellapenna-hhga	SNP	tv	map_siren	*	99.4997	99.1596	99.8422	55.1910	45544	386	45544	72	30	41.6667
ckim-isaac	SNP	ti	map_l100_m2_e0	*	80.3204	67.1841	99.8422	64.2807	32894	16067	32898	52	10	19.2308
gduggal-bwaplat	SNP	tv	segdup	homalt	98.7827	97.7455	99.8422	90.3210	3165	73	3164	5	5	100.0000

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