PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69851-69900 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | tv | HG002complexvar | homalt | 99.2146 | 98.6185 | 99.8179 | 23.3623 | 93797 | 1314 | 91543 | 167 | 141 | 84.4311 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8179 | 99.8179 | 99.8179 | 81.1664 | 548 | 1 | 548 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | ti | HG002compoundhet | * | 98.6394 | 97.4883 | 99.8180 | 33.8383 | 17039 | 439 | 17003 | 31 | 12 | 38.7097 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8863 | 99.9546 | 99.8181 | 38.5067 | 2200 | 1 | 2195 | 4 | 2 | 50.0000 | |
| egarrison-hhga | SNP | ti | map_l100_m1_e0 | het | 99.3929 | 98.9713 | 99.8181 | 63.9434 | 29634 | 308 | 29635 | 54 | 18 | 33.3333 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.9090 | 100.0000 | 99.8182 | 81.0802 | 549 | 0 | 549 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | HG002complexvar | * | 99.2344 | 98.6572 | 99.8183 | 57.3625 | 32915 | 448 | 32967 | 60 | 50 | 83.3333 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8183 | 99.8183 | 99.8183 | 42.3560 | 2197 | 4 | 2198 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7955 | 99.7728 | 99.8183 | 42.2613 | 2196 | 5 | 2197 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.4769 | 97.1706 | 99.8188 | 42.1384 | 1099 | 32 | 1102 | 2 | 2 | 100.0000 | |
| mlin-fermikit | SNP | ti | * | hetalt | 97.1781 | 94.6735 | 99.8188 | 32.3529 | 551 | 31 | 551 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | map_l125_m0_e0 | homalt | 99.5485 | 99.2796 | 99.8189 | 66.7820 | 2205 | 16 | 2205 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7040 | 99.5894 | 99.8189 | 55.7321 | 6063 | 25 | 6063 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7617 | 99.7043 | 99.8191 | 54.9748 | 6070 | 18 | 6071 | 11 | 9 | 81.8182 | |
| raldana-dualsentieon | SNP | tv | map_l125_m0_e0 | homalt | 99.6165 | 99.4147 | 99.8192 | 66.9456 | 2208 | 13 | 2208 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2060 | 98.6004 | 99.8192 | 50.8699 | 6622 | 94 | 6624 | 12 | 3 | 25.0000 | |
| astatham-gatk | SNP | ti | map_l125_m0_e0 | homalt | 99.0916 | 98.3745 | 99.8192 | 66.7668 | 4418 | 73 | 4418 | 8 | 7 | 87.5000 | |
| qzeng-custom | SNP | ti | HG002complexvar | * | 99.1315 | 98.4529 | 99.8194 | 18.2769 | 500571 | 7866 | 493623 | 893 | 400 | 44.7928 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.6805 | 83.0746 | 99.8195 | 58.2831 | 1124 | 229 | 1106 | 2 | 1 | 50.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.4642 | 99.1114 | 99.8195 | 47.8833 | 1673 | 15 | 1659 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 95.9847 | 92.4337 | 99.8195 | 35.5314 | 1637 | 134 | 1659 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | * | * | 99.6468 | 99.4746 | 99.8195 | 58.9401 | 145974 | 771 | 146018 | 264 | 201 | 76.1364 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 95.9847 | 92.4337 | 99.8195 | 35.5314 | 1637 | 134 | 1659 | 3 | 3 | 100.0000 | |
| dgrover-gatk | SNP | * | map_l125_m0_e0 | homalt | 99.3639 | 98.9124 | 99.8196 | 67.9886 | 6639 | 73 | 6639 | 12 | 8 | 66.6667 | |
| asubramanian-gatk | SNP | tv | map_l100_m0_e0 | het | 46.8906 | 30.6425 | 99.8196 | 93.3017 | 2213 | 5009 | 2213 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | SNP | ti | map_l150_m1_e0 | homalt | 98.9885 | 98.1711 | 99.8196 | 71.5110 | 7193 | 134 | 7193 | 13 | 10 | 76.9231 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7425 | 99.6656 | 99.8196 | 59.9732 | 3874 | 13 | 3874 | 7 | 6 | 85.7143 | |
| jpowers-varprowl | SNP | ti | map_l150_m1_e0 | homalt | 99.0024 | 98.1984 | 99.8196 | 73.5826 | 7195 | 132 | 7195 | 13 | 10 | 76.9231 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | * | 98.6727 | 97.5517 | 99.8198 | 64.8483 | 11077 | 278 | 11076 | 20 | 2 | 10.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 95.9028 | 92.2813 | 99.8201 | 63.6601 | 538 | 45 | 555 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | HG002compoundhet | * | 99.3502 | 98.8847 | 99.8202 | 41.8705 | 25534 | 288 | 25531 | 46 | 39 | 84.7826 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4859 | 99.1534 | 99.8206 | 46.3856 | 6676 | 57 | 6678 | 12 | 5 | 41.6667 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 93.9544 | 88.7394 | 99.8206 | 58.1571 | 10024 | 1272 | 10013 | 18 | 18 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7823 | 99.7440 | 99.8206 | 33.3561 | 3896 | 10 | 3895 | 7 | 3 | 42.8571 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4784 | 99.1386 | 99.8206 | 46.1563 | 6675 | 58 | 6677 | 12 | 6 | 50.0000 | |
| astatham-gatk | SNP | tv | map_l150_m1_e0 | homalt | 99.2995 | 98.7836 | 99.8207 | 68.8894 | 3898 | 48 | 3898 | 7 | 5 | 71.4286 | |
| gduggal-bwafb | SNP | ti | HG002complexvar | het | 99.7807 | 99.7408 | 99.8207 | 18.4948 | 313950 | 816 | 314019 | 564 | 202 | 35.8156 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | homalt | 99.7710 | 99.7212 | 99.8208 | 74.4574 | 3935 | 11 | 3900 | 7 | 3 | 42.8571 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.6720 | 99.5235 | 99.8208 | 51.0416 | 6684 | 32 | 6686 | 12 | 5 | 41.6667 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5458 | 99.2722 | 99.8208 | 49.8653 | 6684 | 49 | 6686 | 12 | 7 | 58.3333 | |
| bgallagher-sentieon | SNP | ti | map_l125_m0_e0 | homalt | 99.5535 | 99.2875 | 99.8209 | 66.4916 | 4459 | 32 | 4459 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | SNP | tv | map_l150_m1_e0 | homalt | 99.4020 | 98.9863 | 99.8211 | 73.3556 | 3906 | 40 | 3906 | 7 | 5 | 71.4286 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7697 | 99.7184 | 99.8211 | 26.0771 | 3895 | 11 | 3905 | 7 | 1 | 14.2857 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.9274 | 98.0496 | 99.8211 | 42.1025 | 1106 | 22 | 1116 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6131 | 99.4059 | 99.8211 | 49.8317 | 6693 | 40 | 6695 | 12 | 7 | 58.3333 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.7691 | 99.7171 | 99.8211 | 53.8271 | 6697 | 19 | 6696 | 12 | 7 | 58.3333 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.0845 | 61.4679 | 99.8214 | 27.9279 | 536 | 336 | 559 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_siren | het | 99.3524 | 98.8878 | 99.8214 | 53.1990 | 89979 | 1012 | 89980 | 161 | 58 | 36.0248 | |
| ndellapenna-hhga | SNP | * | map_l100_m1_e0 | * | 99.3352 | 98.8536 | 99.8215 | 61.7229 | 71573 | 830 | 71575 | 128 | 61 | 47.6562 | |
| hfeng-pmm3 | SNP | * | map_l125_m2_e0 | homalt | 99.7985 | 99.7755 | 99.8215 | 68.9465 | 17336 | 39 | 17336 | 31 | 13 | 41.9355 | |