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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1393 1394 1395 1396 1397 1398 1399 1400 1401 ... 1720 1721 » 69801-69850 / 86044 show all
hfeng-pmm2	INDEL	*	HG002complexvar	het	98.8368	97.8772	99.8154	56.6580	45231	981	44870	83	50	60.2410
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4485	99.0842	99.8155	76.9264	541	5	541	1	1	100.0000
gduggal-bwaplat	SNP	tv	func_cds	*	99.4027	98.9934	99.8155	42.5143	4327	44	4327	8	0	0.0000
ckim-isaac	SNP	*	map_l100_m2_e0	*	78.8251	65.1290	99.8156	65.2970	48172	25792	48179	89	22	24.7191
ckim-isaac	SNP	*	map_l100_m2_e1	*	78.8815	65.2060	99.8157	65.2814	48733	26004	48740	90	22	24.4444
ltrigg-rtg2	SNP	tv	map_l125_m1_e0	*	98.9355	98.0707	99.8157	58.1812	15707	309	15707	29	5	17.2414
astatham-gatk	SNP	tv	map_l100_m0_e0	homalt	99.2548	98.6999	99.8159	61.6440	3796	50	3796	7	4	57.1429
gduggal-bwavard	SNP	*	map_l150_m1_e0	homalt	98.6799	97.5694	99.8159	71.2383	10999	274	10841	20	15	75.0000
asubramanian-gatk	SNP	*	map_l100_m0_e0	*	45.8193	29.7342	99.8160	91.0946	9765	23076	9765	18	6	33.3333
qzeng-custom	SNP	ti	HG002complexvar	het	99.0720	98.3388	99.8162	18.0479	309537	5229	307433	566	153	27.0318
raldana-dualsentieon	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	97.7912	95.8467	99.8163	67.9237	5977	259	5977	11	9	81.8182
bgallagher-sentieon	SNP	tv	*	*	99.8908	99.9655	99.8163	21.9055	969355	335	969269	1784	78	4.3722
jlack-gatk	SNP	*	map_l100_m0_e0	homalt	98.9979	98.1928	99.8163	60.9544	11410	210	11410	21	16	76.1905
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	97.8414	95.9429	99.8165	68.2488	5983	253	5983	11	4	36.3636
hfeng-pmm3	SNP	*	map_l125_m1_e0	homalt	99.7929	99.7693	99.8165	66.4802	16866	39	16866	31	13	41.9355
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7250	99.6337	99.8165	77.9263	544	2	544	1	1	100.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7250	99.6337	99.8165	77.9173	544	2	544	1	1	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7250	99.6337	99.8165	77.9531	544	2	544	1	1	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7250	99.6337	99.8165	78.0419	544	2	544	1	1	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7250	99.6337	99.8165	78.0419	544	2	544	1	1	100.0000
ckim-dragen	SNP	*	map_l125_m2_e1	homalt	99.5683	99.3212	99.8166	63.9224	17413	119	17418	32	29	90.6250
jlack-gatk	SNP	tv	map_l125_m2_e1	homalt	99.1882	98.5677	99.8166	67.8547	5987	87	5987	11	7	63.6364
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	97.3268	94.9581	99.8166	57.9977	5443	289	5444	10	9	90.0000
ckim-vqsr	SNP	tv	func_cds	*	99.7367	99.6568	99.8166	38.6616	4356	15	4355	8	0	0.0000
asubramanian-gatk	SNP	tv	map_l100_m2_e1	het	61.4944	44.4347	99.8167	88.7261	7082	8856	7080	13	2	15.3846
ltrigg-rtg1	SNP	ti	map_l125_m1_e0	*	99.1074	98.4080	99.8167	62.4199	28868	467	28869	53	19	35.8491
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8488	99.8809	99.8167	61.3691	10898	13	10894	20	5	25.0000
ghariani-varprowl	SNP	ti	map_l125_m1_e0	homalt	99.2029	98.5967	99.8167	66.5358	10890	155	10890	20	15	75.0000
gduggal-snapvard	SNP	tv	map_l100_m1_e0	homalt	98.2646	96.7599	99.8168	61.4274	8750	293	8718	16	10	62.5000
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.3599	98.9071	99.8168	81.2629	543	6	545	1	0	0.0000
ckim-vqsr	SNP	tv	*	het	99.3645	98.9162	99.8170	31.1430	585283	6413	585211	1073	39	3.6347
dgrover-gatk	SNP	ti	map_l150_m0_e0	homalt	99.3450	98.8772	99.8172	73.4053	2730	31	2730	5	4	80.0000
ltrigg-rtg2	SNP	*	map_l150_m2_e1	het	98.1705	96.5771	99.8173	61.6528	19666	697	19666	36	2	5.5556
asubramanian-gatk	SNP	ti	map_l100_m1_e0	het	64.3552	47.4851	99.8174	85.5215	14218	15724	14214	26	10	38.4615
asubramanian-gatk	SNP	ti	map_l125_m2_e1	*	48.6953	32.2026	99.8174	91.1355	9844	20725	9842	18	6	33.3333
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8177	99.8179	99.8175	80.5121	548	1	547	1	0	0.0000
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7265	99.6357	99.8175	79.8233	547	2	547	1	0	0.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7265	99.6357	99.8175	80.6223	547	2	547	1	0	0.0000
hfeng-pmm1	SNP	tv	map_siren	het	99.6130	99.4093	99.8175	56.2607	28440	169	28435	52	14	26.9231
hfeng-pmm1	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.1973	98.5845	99.8177	71.4580	63519	912	63531	116	89	76.7241
raldana-dualsentieon	SNP	ti	map_l150_m0_e0	homalt	99.4913	99.1670	99.8177	71.1111	2738	23	2738	5	4	80.0000
egarrison-hhga	SNP	*	map_l125_m1_e0	*	99.4419	99.0690	99.8177	68.7095	44905	422	44905	82	41	50.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8179	99.8179	99.8179	81.1664	548	1	548	1	0	0.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8179	99.8179	99.8179	81.2244	548	1	548	1	0	0.0000
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8179	99.8179	99.8179	80.9639	548	1	548	1	0	0.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8179	99.8179	99.8179	80.8444	548	1	548	1	0	0.0000
jpowers-varprowl	SNP	ti	map_l125_m0_e0	homalt	98.7168	97.6397	99.8179	72.4456	4385	106	4385	8	6	75.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8179	99.8179	99.8179	80.3578	548	1	548	1	0	0.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8179	99.8179	99.8179	80.4069	548	1	548	1	0	0.0000
rpoplin-dv42	INDEL	D1_5	segdup	*	99.4999	99.1840	99.8179	94.3988	1094	9	1096	2	2	100.0000

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