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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1392 1393 1394 1395 1396 1397 1398 1399 1400 ... 1720 1721 » 69751-69800 / 86044 show all
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8362	99.8597	99.8128	76.4258	2135	3	2133	4	1	25.0000
bgallagher-sentieon	SNP	*	func_cds	*	99.8899	99.9669	99.8129	24.1761	18144	6	18141	34	0	0.0000
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8597	99.9065	99.8129	76.6441	2136	2	2134	4	1	25.0000
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8597	99.9065	99.8129	76.8740	2136	2	2134	4	1	25.0000
gduggal-bwafb	SNP	*	map_l250_m2_e1	homalt	98.9985	98.1972	99.8130	89.0383	2669	49	2669	5	5	100.0000
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7512	99.6892	99.8133	54.3984	1604	5	1604	3	2	66.6667
hfeng-pmm3	INDEL	I1_5	segdup	het	99.5342	99.2565	99.8134	94.7961	534	4	535	1	0	0.0000
gduggal-bwavard	SNP	tv	map_l100_m0_e0	homalt	98.6984	97.6079	99.8135	64.7875	3754	92	3747	7	5	71.4286
ckim-gatk	SNP	tv	segdup	homalt	99.5043	99.1970	99.8135	89.9144	3212	26	3212	6	6	100.0000
cchapple-custom	SNP	*	segdup	homalt	99.8463	99.8790	99.8136	87.7694	10730	13	10710	20	20	100.0000
jpowers-varprowl	SNP	ti	map_l150_m0_e0	homalt	98.3835	96.9938	99.8136	78.2964	2678	83	2678	5	4	80.0000
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6976	99.5818	99.8136	41.7639	2143	9	2142	4	4	100.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.3923	97.0109	99.8136	86.7219	1071	33	1071	2	2	100.0000
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.1653	98.5252	99.8138	69.6830	45028	674	45028	84	10	11.9048
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.1653	98.5252	99.8138	69.6830	45028	674	45028	84	10	11.9048
gduggal-bwavard	SNP	tv	map_l125_m2_e1	homalt	98.7179	97.6457	99.8140	68.9260	5931	143	5903	11	9	81.8182
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	89.4360	81.0127	99.8141	38.0184	512	120	537	1	1	100.0000
asubramanian-gatk	SNP	tv	map_l100_m2_e0	het	61.3148	44.2480	99.8141	88.7563	6981	8796	6979	13	2	15.3846
dgrover-gatk	INDEL	*	HG002complexvar	het	99.6862	99.5586	99.8141	57.9282	46008	204	45634	85	51	60.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6415	99.4695	99.8142	51.5034	11812	63	11817	22	15	68.1818
ckim-isaac	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.6487	95.5751	99.8142	40.4145	9655	447	9670	18	11	61.1111
ckim-gatk	INDEL	I1_5	HG002complexvar	homalt	99.8588	99.9033	99.8143	52.9260	13435	13	13441	25	24	96.0000
ndellapenna-hhga	SNP	*	map_l250_m2_e1	homalt	99.3346	98.8595	99.8143	86.9517	2687	31	2687	5	5	100.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8839	99.9535	99.8144	47.5030	2151	1	2151	4	4	100.0000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8839	99.9535	99.8144	47.5030	2151	1	2151	4	4	100.0000
asubramanian-gatk	SNP	ti	map_l125_m2_e0	*	48.4647	32.0015	99.8144	91.1697	9683	20575	9681	18	6	33.3333
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9071	100.0000	99.8145	47.5553	2152	0	2152	4	4	100.0000
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	57.3175	40.2014	99.8145	34.3484	519	772	538	1	1	100.0000
gduggal-bwaplat	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	87.8108	78.3843	99.8145	76.5550	1077	297	1076	2	2	100.0000
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9071	100.0000	99.8145	47.6826	2152	0	2152	4	4	100.0000
ckim-isaac	SNP	*	map_l100_m1_e0	*	78.4897	64.6727	99.8146	63.0504	46825	25578	46832	87	22	25.2874
eyeh-varpipe	SNP	ti	map_l150_m0_e0	homalt	99.8168	99.8189	99.8146	77.6220	2756	5	2692	5	3	60.0000
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.7426	99.6705	99.8147	66.5588	4840	16	4849	9	8	88.8889
asubramanian-gatk	SNP	ti	map_l150_m0_e0	het	34.9037	21.1497	99.8148	97.0413	1078	4019	1078	2	2	100.0000
bgallagher-sentieon	SNP	tv	segdup	homalt	99.8611	99.9074	99.8149	89.4615	3235	3	3235	6	6	100.0000
astatham-gatk	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	89.4470	3236	2	3236	6	6	100.0000
raldana-dualsentieon	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	89.2756	3236	2	3236	6	6	100.0000
jlack-gatk	SNP	tv	map_l125_m2_e0	homalt	99.1889	98.5707	99.8149	67.8533	5931	86	5931	11	7	63.6364
jlack-gatk	SNP	tv	segdup	homalt	99.8611	99.9074	99.8149	89.7982	3235	3	3235	6	6	100.0000
hfeng-pmm1	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	90.2264	3236	2	3236	6	6	100.0000
egarrison-hhga	SNP	*	map_l250_m2_e1	homalt	99.5018	99.1906	99.8149	87.6004	2696	22	2696	5	5	100.0000
dgrover-gatk	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	89.5365	3236	2	3236	6	6	100.0000
jli-custom	SNP	tv	segdup	homalt	99.8611	99.9074	99.8149	89.3818	3235	3	3235	6	6	100.0000
ckim-dragen	SNP	*	map_l125_m2_e0	homalt	99.5644	99.3151	99.8150	63.8939	17256	119	17261	32	29	90.6250
ckim-gatk	SNP	*	*	*	99.6466	99.4788	99.8150	23.5123	3038698	15921	3038552	5632	250	4.4389
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.5241	97.2660	99.8150	78.5959	6475	182	6476	12	1	8.3333
ltrigg-rtg2	SNP	*	map_l150_m2_e0	het	98.1544	96.5480	99.8151	61.4966	19438	695	19439	36	2	5.5556
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5619	99.3100	99.8151	62.4675	2159	15	2159	4	0	0.0000
gduggal-snapplat	SNP	ti	HG002complexvar	homalt	99.0919	98.3790	99.8152	19.4474	190328	3136	190130	352	203	57.6705
qzeng-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6334	99.4522	99.8153	34.5977	2723	15	2702	5	4	80.0000

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