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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1388 1389 1390 1391 1392 1393 1394 1395 1396 ... 1720 1721 » 69551-69600 / 86044 show all
hfeng-pmm3	INDEL	*	HG002complexvar	*	99.1462	98.5027	99.7982	57.0316	75786	1152	75648	153	115	75.1634
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.0477	98.3085	99.7982	63.4722	988	17	989	2	1	50.0000
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.8184	99.8386	99.7982	36.6402	2474	4	2473	5	1	20.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	97.9888	96.2435	99.7985	65.0879	2972	116	2972	6	5	83.3333
gduggal-bwaplat	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	89.2731	80.7561	99.7985	45.8371	5447	1298	5447	11	11	100.0000
egarrison-hhga	SNP	ti	map_l150_m2_e0	*	99.3881	98.9811	99.7985	75.2011	20303	209	20303	41	20	48.7805
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	97.3823	95.0803	99.7986	57.9620	5450	282	5451	11	9	81.8182
egarrison-hhga	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6106	99.4231	99.7987	35.5602	3964	23	3966	8	6	75.0000
ltrigg-rtg1	SNP	*	map_l125_m1_e0	*	99.1092	98.4292	99.7987	62.1857	44615	712	44616	90	28	31.1111
asubramanian-gatk	INDEL	I1_5	HG002complexvar	homalt	99.6538	99.5092	99.7987	52.7938	13382	66	13389	27	26	96.2963
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3035	98.8131	99.7988	59.4317	16234	195	16370	33	3	9.0909
ltrigg-rtg1	SNP	ti	map_l150_m2_e1	*	98.9537	98.1229	99.7988	69.2768	20334	389	20338	41	16	39.0244
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.8231	99.8474	99.7988	56.7435	3925	6	3969	8	2	25.0000
rpoplin-dv42	SNP	ti	map_l100_m1_e0	homalt	99.6655	99.5323	99.7990	60.4404	17876	84	17877	36	34	94.4444
rpoplin-dv42	SNP	tv	map_l125_m2_e0	homalt	99.4329	99.0693	99.7991	69.7738	5961	56	5961	12	12	100.0000
ltrigg-rtg1	SNP	ti	map_l125_m0_e0	homalt	99.6656	99.5324	99.7991	68.6301	4470	21	4470	9	9	100.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8037	99.8082	99.7991	72.6490	21857	42	21857	44	44	100.0000
ltrigg-rtg2	SNP	*	map_l150_m0_e0	het	96.8156	94.0050	99.7994	59.7632	7464	476	7461	15	0	0.0000
raldana-dualsentieon	INDEL	I1_5	HG002complexvar	homalt	99.8477	99.8959	99.7995	52.5914	13434	14	13438	27	27	100.0000
gduggal-bwavard	SNP	tv	map_l150_m2_e0	homalt	98.7875	97.7957	99.7996	73.3173	3993	90	3984	8	6	75.0000
asubramanian-gatk	SNP	tv	map_l125_m2_e0	*	46.3923	30.2201	99.7997	92.3039	4983	11506	4982	10	2	20.0000
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6003	99.4016	99.7997	45.8452	3987	24	3987	8	0	0.0000
egarrison-hhga	SNP	*	map_l100_m1_e0	het	99.3656	98.9352	99.7999	63.8790	44876	483	44877	90	31	34.4444
ndellapenna-hhga	SNP	ti	map_l100_m1_e0	het	99.0953	98.4002	99.8002	62.6312	29463	479	29465	59	24	40.6780
ltrigg-rtg2	SNP	*	map_l100_m2_e0	*	99.2235	98.6534	99.8003	56.1674	72968	996	72965	146	24	16.4384
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6190	99.4381	99.8005	49.8273	14687	83	15511	31	20	64.5161
ckim-dragen	INDEL	I1_5	HG002complexvar	het	99.6858	99.5712	99.8007	57.6433	18111	78	18030	36	22	61.1111
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4758	99.1531	99.8007	37.5709	18029	154	18026	36	2	5.5556
hfeng-pmm3	SNP	ti	map_siren	het	99.6838	99.5672	99.8007	53.2950	62112	270	62103	124	11	8.8710
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3062	98.8166	99.8008	85.8631	501	6	501	1	1	100.0000
rpoplin-dv42	SNP	tv	map_l125_m2_e1	homalt	99.4382	99.0780	99.8010	69.8334	6018	56	6018	12	12	100.0000
gduggal-bwafb	SNP	*	HG002complexvar	het	99.7664	99.7319	99.8010	20.1804	464252	1248	464384	926	324	34.9892
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.4059	99.0138	99.8012	86.4311	502	5	502	1	0	0.0000
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.4059	99.0138	99.8012	86.4347	502	5	502	1	1	100.0000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.4059	99.0138	99.8012	86.2267	502	5	502	1	1	100.0000
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.4059	99.0138	99.8012	86.2868	502	5	502	1	1	100.0000
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.0067	98.2249	99.8012	86.1050	498	9	502	1	1	100.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.4059	99.0138	99.8012	86.2267	502	5	502	1	1	100.0000
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2201	98.6457	99.8013	56.9126	19593	269	19586	39	21	53.8462
asubramanian-gatk	SNP	*	map_siren	het	78.4554	64.6317	99.8014	73.5808	58809	32182	58800	117	33	28.2051
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7238	99.6461	99.8015	61.5050	28160	100	28162	56	44	78.5714
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	98.9411	98.0952	99.8016	65.5738	515	10	503	1	0	0.0000
ltrigg-rtg1	SNP	ti	map_l150_m2_e0	*	98.9478	98.1084	99.8017	69.1640	20124	388	20128	40	16	40.0000
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	95.8320	92.1659	99.8018	61.7166	10647	905	10577	21	11	52.3810
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	95.8320	92.1659	99.8018	61.7166	10647	905	10577	21	11	52.3810
gduggal-bwavard	SNP	tv	map_l150_m2_e1	homalt	98.7655	97.7504	99.8019	73.3170	4041	93	4031	8	6	75.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.9429	98.0986	99.8019	70.2570	44833	869	44833	89	30	33.7079
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.9429	98.0986	99.8019	70.2570	44833	869	44833	89	30	33.7079
jpowers-varprowl	SNP	ti	map_l100_m2_e0	homalt	99.4381	99.0770	99.8019	64.9829	18140	169	18140	36	28	77.7778
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.6047	99.4083	99.8020	85.1950	504	3	504	1	0	0.0000

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